Gene detail

Detailed information of XP_074630959.1 in Acropora palmata

Genomic Location: NC_133882.1:9826486...9833558
NR annotation: XP_029194847.2, disease resistance protein RPS2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074630959.1

ATGGATTCGGGAAACCCTGCGTTTCTCTCTTTACTTCTCTCTATTGGCCATGATCTCACTGAGGAGGATTTTGAAAACTTGAAATTTCTTTGTCGAGGAACAGTACCAGCTAGTCGCCTCGAAAACATCAGTCGTCCTCGTGAGCTCTTTCTTGAGATCATACACTGCTGTGGTCTAAGCGAGCAAAACAAAAGTCCGTTAGCATCGTTACTCTTTCACATAGCTCGGCATGACCTAAGAAATCGACTCCTTGGTATTGAAGGTGGTGCCATAACAAGAGCTTTTAACTACTGGGGTGGAATCCCTTGCAGAGTTCCAAATTTTGTTGGTCGTAAAGGACAGTGTTCTGCTGTTGTGGAAAAACTTGATCAAAGTGACTATTGCAGGATTGTGTCCATCACTGGTCCACCTGGCTTTGGCAAGTCTGCAATTGCTATACAAGTAGGACATGAACTTATTTCACAAGGGAAAACAAATGTGTACTATGTTTCACTTAGAGACTTAAGGTCATTGAATGGTTTGGTCAATTCTCTTCTTGGAGCTCTCCAAATTATAGCCAGCAAAGAACCTATACAACAGGCAAAGAATTATCTACAAAGGTTAAGGAAGCATTCTGTTATCATTCTTGATAATGCAGAAGATTTACTGATTCCACCTGTGAAAGATAAGTTTTGTCGTTTTATTGAAGATCTAGCAGAAACTGCTCTTAGTGTTAAAATCCTCATAACCTCTCGTCAGTCAATAACATTCTTCTCTGTAGACACTTTCTCACTGTGCCTTGATTCGCTTTGTCCAGATCATGGGAGGGAGTTACTAATGCTGCTTGATCCAAATGTGAGCGAAGATGATGCAAAACAGCTTGCTTGTCATTGTGGTGGTGTCCCATTAGTGCTTAGAACTACAGGGGCACTTCTGTTGAAAGGAGTAGATGCCAAAGCACTGATCAGTGAATTTGAAATGAGCCCAGTATCAACTCTCAAGTCATTTAGTCTTAATTCTCTATCCCATGAGCACCAGCTTTTCAACTGTCTTGGGATCTGTTTCGACAGGCTTGGTGCTGACCAGCAAGTGGCTCTTATATCTTTGGCAGTGTTCCCGACAACATTTACAGCATGTGATGCTCAGTTCCTTTTCAGGGACCATTCCAAATATAATTTGCAAATCTTGCTTCAAGACCTTGTAGATAACTCCATGCTACAGTTTGATTTCTTGTCAAAGCAGTATTATGTTCACAGCATTATCCAATCATTTTGCCTTGATCGAGTTTCCCAAGAAGCTAGTTTGTCTCCAACTCTTGAATCAGCGAGGAAGCTGTTCAATATTCACTATTTGATGTTGTTGAAAGAGCTATATGCACTTTTCTTGGGCAAAGGATGTCTCAAGGCAACTGAGAAGTTCCTAATTAATCGACGGAATATTAGACAGGCTTTGAACAGCTCTCTGCTTGACCCTGAGTTGGAGGAAATGTGCATTGATACAGCAACTGCTGTTTGCCCATTATTAGCCAAAATGCTGCGTAAAGAAAAGTTTCTTTCAGTTTATGGTCAATTTACAGCTCTCTGTAAAGCAAATGGAGACAAAAAGCGTTACAGTGATTGTTTGACTGCAGAAGCATTTTGCATCCTTTCTCATTGTGCTTGTCATCTTCCCTGTCCTTCGGCTGTGGCTGGCTTCAAAGAAGCTGACAATTTGCAAAAAGGGTTAGGAGATGACTCATCAACAATGCGTGCAATTTGTTTAAGTAAACTTGGTCGCTGTCATGGGCAGTCAAAGGATCTTGAACAAGCCATTCCACTTATTAAAAGGGCCATTGAGATCAGGGAGAACCTCAAAGATGAGGTTTTTGTTGCTGTTGGATACAAAGATTTAGGAGCTGCTTATGCATTCAATGATGCACATAAGGAAGCTAATGAAATAAGGAAGGAGAAGTCTCTTCCGGTGTATCTTGATTTACTTGGTGACCATCCTTTCACTGCCACTTTAATGGAAGACATGGGAGCATCGTACTTGGAACTTGGAGACTATGATAACTCAATCAAGTTCATTCGTGAGGCATTGCGTATGAGAAAACAATCTCTTGGGGATCACCAAGAAACTGCACGATCATATCACGACCTAGGAATGGCGTTAGCAGTGCAAGGATACTTCACCGAGGCACTGGGTGTGTTGAGAAGTGCACTTGCCATCCAAGACAAGGTTCTTGGAAATCATCAGGAGACAACACGTACTCATAGACAGATCGCTCATGTTCTGAAAAAGCTTGGACGTGACAAAGAGGCTAGAACAGAGGAGCTGATGGCTCATCAAAGAGCTTTATCCATTTATGAACCCCAACCTGAAAACTAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01335	DED	Death effector domain	Domain	Interproscan
PF13401	AAA_22	AAA domain	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001875	Domain	Death effector domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049945	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691	REGULATOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan