Gene detail

Detailed information of XP_074631337.1 in Acropora palmata

Genomic Location: NC_133889.1:493310...523269
NR annotation: XP_044185267.1, LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074631337.1

ATGACTGATAGGACAGCACCAACCTCGTCCCTCAAGCTAGAATGGGTCTATGGCTATCGTGGACACCAGTGCAGAAATAACCTTTTCTATACAAGCGCGAAGGATATTGTATACTTTGTGGCGGGAGTTGGTGTCGTTTACAACACCAAGGAAAACTCCCAGCGATTCTTCCTTGGCCACAACGATGATATTATCAGTCTTGCAATACACCCGGAGAAACAAATGGTAGCAACAGGTCAAGTTGGCAAGGATCCATATATCTGTATCTGGGAGACCCGCAATTGTCAAACTGTATCGATCATGAAGGACACCCATCAAAGGGGAGTCACATGTCTAGCATTCAACAATGCAGGAACGCTGCTTGTCTCGGTGGGGCTGGAAGATTATCATCTGATAGCTGTGTGGGACTGGAAGAAAGGGAAAGTTTTGGCTTCAGTCAGAGGGCACACTGACAGAATATTTGATATTCAGTTTAATCCTTATCAAGAAAATTCATTGGTCAGTTGTGGAGTAAAACATATCAAGTTTTGGACTTTGTGTGGAAATGCCCTCAATCCCAAGAAAGGTGTATTTGGGAAAGCAGGAGAAATTCAAACCAACCTGTGTCTAGCTTTTGGTACCAATGATGTGACTTACTCTGGGACCCTTAGTGGAGAAATTTACAAATGGAAAGGACACAACCTTGCTGGATCCATACCAAACGCACATACGGCTGCAATATTCACAATGCATGGAAATGACGATGGCTTTGCAACTGGATCAAAAGATGGCACTGTCATTTTGTGGGATAAGGATTTCAAACCAATCACTAAATTGGATATCATCAATACTCCCATTGGTTACCAAGGCCTCTCTGTGAGGAGTACATTTTGGTCAGGAGAAAAAATCCTTGTTGGTACCAATGCTGGGGAGATATTTGAAGTCTTAGCTACAGAGAAGGACAAACCCAGAACAATTGTGCAGGGGCATGCAGAGGGTGAGTTGTGGGCTTTGGCTGTGCATCCAAGAAAACCAATGTTTGCAACTGGTAGTGATGACAGAAGTGTTCGTTTATGGAGCATGTCTGATATGACACTATTGGCCAGAACAGATCTGGAACAGAAGGCACGCTCTGTTGGTTTCAGTCCAGATGGAAGTCACCTAGCTGTTGGGCTTGGTGACGGATCTTTTATGGTTTTAAAAGCTAGGGATTTATCAGAAGTTAACCACATCAAGGATCGGAAGGAAGTAATACATGAATTGAAATATTCACCTGATGGCCAGCACCTTGCAGTTGGGTCCAATGACAACTTTGTGGACATCTATTCTGTTGCGCAGCGATATAAGAAAGTGGGAGAATGTAGAGGCAGCTCTAGTTTTATCACTCATTTAGATTGGTCTATGGATAGCAAATACTTGCAGACTAACTCTGGTGCTAGTGAGCGATTATTCTTTAAAATGCCAAGTGGCAAGAGGACCGCAAACAAAGAGGAATTAAAGACGATTCACTGGGCTACATGGACAAGTGTTCTGGGTGTGGAAGTAAATGGCATCTGGGAAAAGTACACGGACACAAATGATGTCAATGCTTGTGATGCATGCTTTCAGAACAAGGTTCTAGTGACTGGAGATGACTTTGGACTCGTGAAGCTCTTTAGATTTCCTTGTCTCAGAAAAGGTGCCAAATTCAGAAAGTATGTCGGACATTCAGCTCACGTGACCAACGTTCGATTTTCTCATGATATGATGAGAGTGATCAGTGTCGGTGGGGGAGATCATGCAATCTTTCAATGGCGCTACTTGCCTGAGGGTTCCCATGGTGATGACAGTGATGAAGCTGATGGAGGTGCATACCTGGAATCTAATAGCGATGAAAGTGATTCTGAGGCTTCTGATGTTGACGAACTTGACAGTGATATTGAGAACGAACGTCAAATTGACTACGGAAGGACATTGTATCGTGAGGATTTGCCAGCACTGAAGGAGAGAATGAAACTTTCAAAAGGCGAACAAGAAAAGGAGGAAGATCGTGTTCCTCGTCAGAAACCTCCAAGTCAGGGGTTGAAATTGGAGTTTGTGTTTGGCTACCGAGGGTACGATTGTCGGAACAATCTTTTCTACACTCAGAGTGGAGAGATTGTCTACCATGTAGCTGCCCTTGGGATTGTGTATGATCGCCAGCAACACAAACAGAGATTCTACAATGCCCACACAGATGATGTTCTTTGTTTGTGTATCCATCCAGTCCGAGATGTGGTGGCCACAGGACAGGTTGGTCGGGATCCTGCAATTCATGTATGGGACGCTGTGAAGATGGAAACACTAGCCATTCTGAAAGGAAAACATGAAAGGGGTGTATGCTCTGTGGACTTTTCAGGTGATGGAAAGAAGTTAGCCAGTGTGGGGCTTGATGATAATCATGTCATTGTTGTGTGGGACTGGAAAAAAGGAGAAAAGCTTGCCACCACGAGGGGCCACAAAGACAAAATCTTTGTTATCAAGTGGGATCCACATAACGCTGACCGTCTTGTGACTGCTGGAATAAAACACATTAAATTCTGGACACAGACAGGGGGTGGATTCACCTCCAAAAGAGGTACTTTCGGTGATGCTGGAAGAAACGAGACCATGATGTGTGCGACGTATGGAAAAGTACCAGACCTTTTGTACTCTGGAGGGGCCAGCGGCAAGGTGTATGTTTGGAAGGGAAACATGTTGCAAAATGCAGTTCAAGCACACGAAGGCCCTGTTTTCGCTATGCAAGTCTTAGAAAAGGGCTTCGTAACGGGCGGCAAAGATGGTCTTGTTGCTCTCTGGGATGAGAACTTTTCGCGCTGTCTGAAGAACTATAAAGTTACTCGTACAAGTTTAAGCCCTGGTCCGCCATTATCCATCTTACTAGAGGATGCCCCTGCCATTCGAGCAATTACTCTTGGACAGGGGAAAATATTAGTGGGAACCAAGAATGGAGAGATAATGGAGGTTGACAAGAGTGGACCAGTTACTGTTTTAGTTCAGGGTCATCTTGAAGGTGAACTGTGGGGTCTAGCTTCTCATCCATCAGACGACGTCTGTGCGACTGTCAGCGATGATATGACCGTCAGAGTCTGGGGTCTGGCTGATCACAGAATGAAGAATGTCCGAAAACTTCAGAAACCTGCGAGGAGCATTGCCTTCTCACCTGACGGAAGAGCATTGGCAATTGGATTCAAAGATGGTAGTTTTCAAGTGGTCGATTCCACCACCTTGGAGGACATCGTTGGCTTTCATCACAGAAAGGAAGAAATTTCAGACATCAAGTTTTCACCTGGACAAGGTAAATATCTGGCCGTGGCATCGCATGACAACTTTGTCGATATCTACAATGTGCTGAGTAGTAAAAGAGTTGGAATCTGCAAAGGAAGTTCGAGTTATGTCACTCACGTGGACTGGGACTCCAAAGGGAAGCTTCTTCAGACCAATTCTGGTGCGAAAGAGCGGTTATTTTTTGAAGCCCCGCGAGGTACACGGCAGGCATTGGGAACAAATAAAGCCAAAGAGATTGAGTGGTTCACTTGGACAGGTGTGTTGGGTGAAAACTGCACTGGAATCTGGCCGCCACACTCGGACATTACGGATGTAAACACCGTTGATTTAACTAGGGATAAAACAGTTCTAGCCACTGGAGATGATTTTGGATTTGTGAAGGTGTTCGAGTTTCCTGTCAAGGGAAAGAACGCCAAATTCAAGAAGTATGTAGGCCATTCTGCACATGTTACAAATGTTCGTTGGACAAAGGATGACACGCGCTTAATCTCAGTGGGCGGGGCTGACACGTCAGTCATGGTTTGGTCGCATGCTCGAGCCCAGGCTCAGGGATTGGACGTGGATGTCGGTGGAGATAGTGATGACTCAGATACAGATTCTGAGGAGGAAGGAGGATACGATAGCGATGTGGAGAGAGAAAAGAACCTTACATACGAGGATAAGATCTATGCGAATCCGCTGCGTACCACAAAAGGAGTCAAACCGCATTTAAGAGAAAAACAAGATGATGGTGAACACAGACCCGCAGTTAGCCGCGGGTCCAAAGCGCCGCCAAAAGTTAGACAATCAGATCGACAGAGAGAAACTGGAAAAAAGAGAAGGAACCAACCAATTCAGGAACTCACCCTAGATTTTATTCACGGCTATAGGGGATTTGACACAAGGAATAACCTGCACTACCTCCCCGAGGGGGACATTGTGTACCATGCCGCTGGAGCGGGTATTGTACTCAGCACTGCAAATGGAGTTCAGTCATTTTACCTTGAACACACTGATGACATCATTTGTTTAACTGTCAATCAACATCCTAAGTTTAAGAATATCGTGGCAACTGGTCAGATAGGTGCAGAGCCTTGTGTTCATGTGTGGGACGCTGCATCAAAAGAGACACTATCCGTGATACAAGGATTTCATACCAAGGGAGTTTGCGCTCTGAGTTTCAGCTGTAATGGAAAACTTCTTGTCACTGTGGGGATTGATGCTGGTCATAGCATTGCTGTGTGGAAGTGGGCTGAAGGCAGCAAGCTTGCTAGTTCACTCGGGCACACGGAGAGGATTTTTGTAGCTGAGTTTAGACCCGACTCTGATAGTCAGTTTGTCACGTGTGGTGTGAAACACGTCAAATTTTGGACTGTGGCTGGTGGACAACTGGTCGGCAAGAGAGGGGTCATAAACACACCCCAGAGGGAGGGAGAAGACTCTCAACTCCGGATGCAAACTATGCTGTCTGTTGCCTTTGGAGCGGAAAAGCTGACATTTACAGGAGCAATGAATGGAGAGGTCTTCGTTTGGCAAAGTCACAAGTTGATCAGAGTGGTGAATCGCGCTCATGGTGGCCCTGTGTTCACCATGCATACAACCCTGAGAGACGGACTTATTGTAACGGGAGGAAAGGAAAAAGGAAAATCCGAGGAGGGTGTGGCCATCAAGTTGTGGGATCAAGAAATGAAGCGGTCGCGGTCTCTTAGCCTGGGACCAGGAGCTGGCATAGTTCGGTCCATTTGTAGAGGAAAGGGTAAAATCCTCGTGGGCACCAAAGACAGTGAAATAATTGAGATAACAGAAAAGACCGCATCATCTCGGACCCTTGTCCGGGGACATACTGAAGGAGAGATCTGGGGTCTTGCTTGTCATCCTGACCGGGAAGTGTTTGTTACCGCGAGTGATGATCAGACCGTGCGTCTCTGGGACGTAGCCAGTAAGACCATGTTGAAGATGGCATCACTGGGCGTGGCTGCTCGCTCCGCTGCGTTTTCTCCTGATGGCGAGCTACTTGCTGTTGGCCTTAAAAATGGCGCATTTGTTGTGTTAAAGGCTCCTGACCTTACGATTGTGGCTCAGAAGAGAGATCGTCACAAAGCCATCCAGGACGTCAGATTCAGTCCAGATGGGAAATATGTTGCTGTAGGTTCAGATGACAGCTGTGTTGATTTTTATGAGCTGCGTGAAGGTCGACCTCTAAAACGTGCAGGTTACTGTAAGGGAATCGCTTCGTTTGTGACCCAGATGGATTTCTCAGCTGATGGCAGATTTATTCAAGTTTCCACAGGCGCGTATGAACGTTTAGTGTTTACGGTTCCGGACGGAAATCCTTTGAAAGACAGAAAAGAAATCAATAGAATTACCTGGGACTCCTGGACAAGTGTCCTCGGAAATGAAGTGATTGGTGTGTGGCCTCGAAATGCAGACAAAGCTGACGTCAACTGTGCGAATCTTTCGTCCAGCGGTCTGTCACTCGCCACTGGTGACGACTTTGGATTTGTTAAGCTGTTTGAGTTTCCAGTCACGGAGAAATTCGCCCCTTTCAAGCGCTACGTGGGTCATTCAGCCCATGTAACAAACGTGCGATTTACCAGTGATGACCGCTATCTGATAAGCGCAGGCGGTGATGATTGTTGTGTTTTTGTGTGGAAATGTAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMW3	Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens OX=9606 GN=EML6 PE=1 SV=2
Q5SQM0	Echinoderm microtubule-associated protein-like 6 OS=Mus musculus OX=10090 GN=Eml6 PE=2 SV=1
Q8BQM8	Echinoderm microtubule-associated protein-like 5 OS=Mus musculus OX=10090 GN=Eml5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001632 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF03451 all species →	HELP	HELP motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR005108 all species →	Conserved_site	HELP motif	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18598	EML6; echinoderm microtubule-associated protein-like 6	-	Cell motility	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.