Detailed information of XP_074632008.1 in Acropora palmata

Genomic Location: NC_133889.1:1760865...1816210
NR annotation: XP_044163158.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114962634 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B3EWY9Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q8JZM8Mucin-4 OS=Mus musculus OX=10090 GN=Muc4 PE=2 SV=2
Q99102Mucin-4 OS=Homo sapiens OX=9606 GN=MUC4 PE=1 SV=5
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000210 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00530
all species →
SRCRScavenger receptor cysteine-rich domainDomainInterproscan
PF12662
all species →
cEGFComplement Clr-like EGF-likeDomainInterproscan
PF00094
all species →
VWDvon Willebrand factor type D domainDomainInterproscan
PF06119
all species →
NIDONidogen-likeFamilyInterproscan
PF00431
all species →
CUBCUB domainDomainInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan
PF07645
all species →
EGF_CACalcium-binding EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR000859
all species →
DomainCUB domainInterproscan
IPR036772
all species →
Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR051495
all species →
FamilyEpithelial Barrier and Cell Signaling ProteinInterproscan
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR001846
all species →
Domainvon Willebrand factor, type D domainInterproscan
IPR035914
all species →
Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR009030
all species →
Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR000152
all species →
PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR017448
all species →
DomainSRCR-like domainInterproscan
IPR005533
all species →
DomainAMOP domainInterproscan
IPR003886
all species →
DomainNIDO domainInterproscan
IPR001190
all species →
DomainSRCR domainInterproscan
IPR026823
all species →
DomainComplement Clr-like EGF domainInterproscan
IPR049883
all species →
DomainNOTCH1 EGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13802
all species →
MUCIN 4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0007160
all species →
Biological Processcell-matrix adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074632008.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074632008.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
74TPM > 0
2Conditions
38.3Max TPM
6.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 39 6.33 38.28
all_coral_tissue · baseline 38 35 7.44 24.71

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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