Gene detail

Detailed information of XP_074632017.1 in Acropora palmata

Genomic Location: NC_133889.1:1551913...1564177
NR annotation: XP_029197476.2, tectonin beta-propeller repeat-containing protein 2-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074632017.1

ATGGAGAAAACGCAAGATTTTGTCATTGGGAGGGATGTGGTTCTAGCAGAGCTGGAACTAATGAGTGAACTCTTGGATTCTCTGCCACACAAGGCACAATTTGGTCGCAAAAACTTGATGGGTCACGTTTGGGACAAAGCCAAAGAACACGGAATGAAGAACTTGTTTCACTCATTAAGAGAGCGAGCACAGGAGAATCCCAAAACCTTGACCGTCGATTACACTTGCTTGGATGTATCATATGACGCTATTGTTCTTGGCACAAATGTGGGCGTCATTTTTCTATACGATCGCACTTGCAGAAGACTAAGCCGTGTTCCATCTGAGGTAATCAATGAACCTGCCAAGTGTGTACGACTTCTGCCAGCTCACAGTTATGCAGCAGTTGGTTTCAACAGTGGGTTAATCAGGGTGTTTACGTTTGTATTGGCATCTCAAGGATTTGGAAAGCCCCAAAGCATGTATGTTAGTGGTGCGCATAATTCTGCTGTGACCTGTGTGGAATGGTGTCCTGATGGGGAATTGCTTTACAGTGGTGACATACATGGCAAAGTCTATGTTACAGTTGTCAAGTTTCAGGAGGGAATGACTCAAACAGCTTTAATGATGCATGAGCCTTCTCCTATTGTCCAGCTCTCCTATTCATGGACTAATCTTCTGATTTCAACGGAGAAAAGATCAATTCTTTGGGACTTTCACAGTGAAATTATCACCCAAGTTGGACAAAAAGAAAGGAAAAGTCCTGGACCATTTGGTGCCATATTTTATCCTCCATCAAAAGAAGAGAAAGAGGAAACGCAGCCTGTGATCTACACCTCCAGACCTGGCCTGCGGCTTTGGACTTCTGATGTCAGTGGAAAAGTATCTGCTACTCTTATGTACAAGGCTTTAACCAATGAAAACCCACCTGGCATCATGATAATGAATCCTCCACCTCCCTGCTTTGCAAGTCTTCCCTCAGGCTATCAACCTCAATTTGGCCGGCTCAGATTGCTTCATGGGCAATTTTTTGTGACATGGGACATTTCTCACCTCTGGGTTTTGGATGCCTCTCCATGCGCATTGGTTGGTTTTCATAGCAATCTTGGTGAGATCGTGGATGTCAGTACAGCGGGTGATGAGATTTATGTTTTGCAGCGGGGAGGGGAAAGGCTCATAATGAAGCTGTCATTAATTCCAAAATTGAGTAACCCTCTGCTTGGTGTCATGACGCTGTTAGAGCACAGCTACAAAAGCCTAGAAGAAGAGAATTTAGACGAACAGGAGCCAGGGGCAAAAAAGCAAGAGGATTCCGTCAAAAAGCATAGCATAGCTCTACCTGCCTTCCTGCACGCTGTTGATGCGACCACACCCAACATTTTGGAAGAAACGAATGAGAGAGACTTGTTTAAGAAGTATGAAGAGATCAGACATCAGGATTTTGGGGAAATAGTGTTTCGAAAACAAAAGCGATCAAGGAAGAGATACAATAAAGATCCATCAGGAAAAGCAGAGGTAGATTTTTCAGATGACTTGAAAGATGAATTAAAGTCCAGCGACAGTTTACATCCCTCTGGCCATCAGGGAGGTCTTGTCGCTTCAGACCTATCCGACCGACCCGACCCCATGATTCAAAGATTGTCCACTATTTCCTCAGACTTTGATTCTTGTGATAAATGCAGCGAAACATCTTCAGGACAAAACAGTGACGCAGGGAGGGAGGAGGAGGCAGTCTTGAAGATTGTTCGTGTCACGCCAGAAGGCGTTCAAGAAAAACATGCAGCAAGTGATGTTGCATCTGATGCGTGCGTGACATTGCCAGACTTAAGAAACGAAGATTGTAACGGCGCTACTCGAGCTGATGATTTCGTGACATTGCCAGTGGTGACAGGGGATGTGAACCAATTGGAAAAAAAAGATGAACTGAGTGTTTCGCCCTCTTCGACGTCGGTTTCCGAGGAAACGCTGTCACCAGAAAATAGCCTGTGTGCTGATTCAATTGCAAGCATTGCAGTCCAACAGGATAGTCGTTTGGAAAACGCAACGTTAGACCAGGAACGATCTTCCAAAAGTGCCGACTATCCACCTAAAGTTTACTCGGACATTTCCGTTGATATTTCCGATGGGGGGTTATCCGATGCTTCAGTGGAGAAATCTCGCCCATCTAGGATTCAACTCGGAAACTCCAGTTTTTCGGTCGTTTCTCCCTTACGTCATAGGGCGAGCAGTGATGTTTTAACAGACTCTGAAGGAACACCGCCCGCCTCCTTGGACTCTGATGGTGCCGAAGAACTCAGCGACACCGCATCCTGGCCCAGGTCTCCATCCAATGGGGCTTGGAGCGATCGTGAAAAAGTGTACCCTGAAAGTGTTCAACCTCTGGAAGAATCCTCTTCGTCTCCAAGTTTTGGATCCTCCCATTCTCAATCCCCTGGCTCAAATCAGACTGGTCTGCGCATGCTCGCGGACAGCTGGGCAGAGTATTCCCCACCGGGTCAGGGATACGTACAATTCTTGGCCGTTTCAGACATGCACATTTGGTGCGTTACCAAGTCTGATCTTATTTTTTACTGCCCTACTCATTTCTCAGTGGTAACATGGACTCAGCTGAGAGGAACGGCTAGAATGTTGGCTGTCAATCAGGGCGGTGACGTCATTTGGTGCATTGATCAGAACAATTACGCATATGTTCGCATAGGAATCAACCCAAAGCATTTGACAGGAAGGAAGTGGCTGCCAGTGGAAAAGGAAATGCGATTTGTGGCTGTTGATCGGTCAGCGGTCTGGGGAATCAAGTTAAACGGTGACGTTTTCCTGCGGACAGGGGTGAGCAGAGATCACCCGACTGGAAGGGGTTGGCAAACTATCCAAGTGGACACCCAATATCGGCAGGTTTCATGTTTCAATGGACTAGCTTGGTTATTAGACAGAGTTGGACACATTCATGTGTATAAACACGAAGGGGGCAACTTGACAACGTCACCTGAAAAGTGGGAAACATTGAAAGATGTCTCGGCAAAGTGGATTTGCCTCGGAATCGAGGGCGTCGCTTGGATAGTTGACATGAAGGGCTCAATTTGGTTTACTGACGTAACTCGCGACCTTCCGACTGGAAGCACTTGGTATCAGGTCTCTCTCGGTCAATACTTGATGCAAAATCGCAGTTTGCTCGAAACTCTGTGGTCCTGGGTAATTCGAGGGGATGATGTCAAATTCTTGACTGCGAGTCCAATGTCGGGAATCTGGTTACTAGGTACCGGAGGCTCGATCCAGGCCTCGCGCGGCCATTTGCTGGGAACCCGTTGGGATTCGGTGGTTCCGCAAGGGATTGCCCAGTCTGTTTTCTGGTCGTACCTGTCCGTAGGCGCATACAGGGGTGATTCTGGGCTGGGTCATCTGTGGATTTTGCAACCAAATGGCGAATTGATGTGTTTTCAACCCAGCAAAAGACCCGTGATTATAGAACCCCCGCGCGGACAAATATTGAAACTGATTTCAGCATCTGGCGACAACGTGTGGGCCATCACACACACGTTTAGAGTAGTTCAACGCTCGGGAATTTCAGACACTTGTCCGCTGGGCTTCGACTGGGTCGAGCTGACACTGCACCAGTTCGGCATTGGAAAAGTTGTCCACCTCAGTTGCGGTGCTCTCAGCACATGGGCAGTGGATGATGCAGGGAATATCTGGCTGCGGATCGGAAGGGAAGACTCCATAGATCCAGCCGTGACACAGGCTTGGATTCCAGTGGATGGAAATCCCCTACCGGGATGTCGGTTTAACAAAATAGCGGTAAGCCCCGCGGATAGTGTTGTATGGGCGGTAGACGATCGCAACAATGTTTACGCGCGCCGTGATGTCACGCCAAGTTTTCCTATTGGCACATCTTGGGAGGTAGTTCACGGAACTGGAGTGCGTGACGTAGCCATAAGTGATCACATGGTCTGGGCAACTTGTCCTAATGGTGATGTCGTTTGCCGGTACGGAGTGAACAAGGACAATTGCTTGGGTTACTACTGGAAAAAAGTTCCAGGTAATTTTGAGCTTATCTCGGTCACTCCTGAAGACGAGCTCTGGGCCCTTGATAAGAATGGACAGCTGTTTCACCGTAAGACACAGCATTTTTATGGAACCCAATCGCCGTTCAAGGCACGAACCTACAGTGCTCTGTTTTCCAGCGATGACGACTGGGAATTTATTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005793 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19193 all species →	Tectonin	Tectonin domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR006624 all species →	Repeat	Beta-propeller repeat TECPR	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23287 all species →	RUBY-EYE2-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032527 all species →	Biological Process	protein exit from endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23881	TECPR2; tectonin beta-propeller repeat-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074632017.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

67TPM > 0

2Conditions

22.7Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	39	9.05	22.68
all_coral_tissue · baseline	38	28	8.41	14.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.68
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.58
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.69
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.10
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.89
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.98
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.72
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.46
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.36
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.18
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.90
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.82
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.42
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.37
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.91
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.82
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.78
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.50
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.47
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.42
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.28
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.03
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.02
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.77
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.45
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.20
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.15
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.13
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.06
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.03
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.95
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.94
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.90
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.59
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.23
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.35
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.58
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.67
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.94
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.70
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.57
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.55
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.68
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.36
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.01
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.63
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.42
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.94
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.88
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.86
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.75
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.34
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.29
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.03
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.01
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.99
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.97
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.86
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.71
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.53
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.52
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.79
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.78
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.64
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.27
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.75
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.75
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.