Detailed information of XP_074633110.1 in Acropora palmata

Genomic Location: NC_133890.1:3809969...3848133
NR annotation: CAH3019149.1, unnamed protein product [Porites evermanni]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86YW9Mediator of RNA polymerase II transcription subunit 12-like protein OS=Homo sapiens OX=9606 GN=MED12L PE=1 SV=2
Q8BQM9Mediator of RNA polymerase II transcription subunit 12-like protein OS=Mus musculus OX=10090 GN=Med12l PE=1 SV=2
Q2QCI8Mediator of RNA polymerase II transcription subunit 12 OS=Danio rerio OX=7955 GN=med12 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002105 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09497
all species →
Med12Transcription mediator complex subunit Med12DomainInterproscan
PF12145
all species →
Med12-LCEWAVEukaryotic Mediator 12 subunit domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019035
all species →
DomainMediator complex, subunit Med12Interproscan
IPR021990
all species →
DomainMediator complex, subunit Med12, LCEWAV-domainInterproscan
IPR051647
all species →
FamilyMediator complex subunit 12Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46007
all species →
MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003712
all species →
Molecular Functiontranscription coregulator activityInterproscan
GO:0006357
all species →
Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592
all species →
Cellular Componentmediator complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15162MED12; mediator of RNA polymerase II transcription subunit 12-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074633110.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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