Gene detail

Detailed information of XP_074633381.1 in Acropora palmata

Genomic Location: NC_133890.1:4428890...4445202
NR annotation: CAH3172263.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074633381.1

ATGTGCCGTAAGATTTCTTTCCTGCTTGCCATCTTGGCATTATTTTGTGGCCATCAGACGGTGGCAGCTGTGACCATAGACCCACCTTCATTGCAAACACCATCTGGCAGAGAAATAACCATTACATGTAAAATGAGCGGAGGAGAAACGTTTCTTGGTTGGTTTAAGCCAGATAAGACTAAGGTTCCCCAGTCTTCGTCTGCAACAGTACATGTGGAGGTGAACATAAACACATTCAGACTAAAATTTACAGATGTGAAGGTGGAGGAAGGTGGTGAATACGAGTGCCGAAGCCGCTCTGGCAGTAAAGGAACATTTACCCTGGAGGTTCTCTTTGACATATCAAATGTGGACCCCACACAACATATTAAAATTGGAAGAGAAGGCACCATTAATTTAGGCGTCAGAGGCTACCCAAAACCAACAATAACGTGGAAGAAGGAAAAAACTACCTTAAATGCTGCCAGAGATCCCCGCTACACTCTACTCAATGATGGCTCCCTGAAAATAAAAAATGTCAAAATTGCTGACCAAGGCAATTACACCGTCAACATTCAACAAGGAGCTAGTGGCAAGGTGGTTGAAATTGAGGTGTATGCTGTGGAACATCCAAAGATTGTGGCTTTCCCAGACTCTAAGAAGTACCTCACTGAAGGTTACTCTGCAGTGTTCATCTGCAAAGCAACTGCCAGGCCACCACCAAAATATGAATGGCTCAACCCAAAAGGCACCAAGATAACATCATTCTGGCCCTTCGAAATCAGTGGTGGTAACTTAACTATCAAGAGAGTCACCAGAGGTTTGAATGGAACCTACACATGCAGAGCATATAATGTCATTGAAAAAGTGCTGATTGGAGAAGTCAAAGCCAAGGTTGCAATTGTTGCTATTCACGTCCCTCCTACGATCAGATTAACTATTGGTAATGGTCCCAGGCCTCTAGAGAAAGGTGAAAAGGCTACATTGACATGCAAAGCGAAAGGATCTCCCATACCAACTGTAAAGTGGATAAAGAATGGGCAAAGAGACCCTCGTCAAACAATTTCAAAGCGGGGTGAAAGTATTATTGCAATAGAAAAGGTTCAACTTGTGGATGGAGGAAAGTACATTTGTCAGGCATGGAACAGTGCTGTGGATAGTAATGGCAAAGTTATTGTGGCCACCAAGGTCCACACTCTTGATATCATAGCCCGTCCATTTATCAACGTGCAGGCCTCTCCAAGCATAATTTACTCTTATATTGGAAACACTGACCCCACTTATATCAGCTGTACATTTGGTGGTTCGCCTGTGCCTTGGGTTGTTATGACGTTCAACAAGAAGCTCCAATCAAATGCATCAAGTACAGCCAATGTGAGCATTATCACAAATTCCAAAAAGAAATTTGGGACTTTTCATTGTCGAGCAAGGAATAGGTATGGGATCAAAAACCAGACCATCCAACTTAAAGAAGTGGAATCTCCAGGACTAGTTCGTGAATTTGCACATGAAGCTAAATGTGATAGTGTAACACTTACTTGGAAGAAACCTTCAAAAGACGGAGGGATGCCAATCACAAAGTTTGTCCTCGATTATCGAGGTCTTATGCGAAATATTGATGCCTTAGAGACTTCGTACACTGTCACAGAGCTTGATCGAAATAAAAAGTACAGTTTTGATATCCGAGCCACCAATAAGGGAGCCTGGGGTCCAAAAACAACTACAACAGTGACAACAAAAAAGTATTGTGAACCTGGACGCCCCATTATTTACGAGCCAAAAGACATGGATCTCGAGGAAACAAGTTTTACTCTCAAGTGGCGCCGACCACAGGACGATGGAGGAGATAAAAACATCGAGTACATTGTCAGATACCGCGACGAGACGGAGAGTAAACCGGGGCCTTGGAAGGAATTTGTAACAAAGAAACAGGAACACAGAATCAAAAATCTAGGCAAAGACAAGAAATACAAGGTTGAGGTGATGGCGAGAAATAAAGGTGGAAATAGCAGCCCTGATGAGAGATTTTACCGTACAACGAAAATTACAATTGCCGCCAGTTCGCAGTCTCGATTGGTCGCTAGTGTGCTTGTAACATTTATGGTAGGAATCTTTCATCTTCTCTGA

Transcript

Protein

Uniprot

Uniprot term	Description
O35136	Neural cell adhesion molecule 2 OS=Mus musculus OX=10090 GN=Ncam2 PE=1 SV=1
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
Q8WZ42	Titin OS=Homo sapiens OX=9606 GN=TTN PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala