Gene detail

Detailed information of XP_074633546.1 in Acropora palmata

Genomic Location: NC_133890.1:5351193...5364035
NR annotation: XP_029213563.2, protein O-mannosyl-transferase TMTC2-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074633546.1

ATGCCATTACAAAGCAACGACTCTCACAAATCATACCGTCCTATTACCGTACTTACATTTCGGTGGAATTATTTCATCGGCGGCTTAAACCCATTTGGCTATCACGTGATTAATGTTCTCCTCCATTCAGCTGTCTCTGTACTATTCCTCCGTCTTTGTACAAGAATATGTCTTACATACATTGGTTCAGGCAACAAGGCGTTACCAGTCTTATGTGGATTATTTTTTGCCCTTCATCCAATTCACACTGAAGCTGTGTCTAATGTTGTTGGCCGCGCAGATCTTCTTTGTGGCTTGTTTTATCTCTTGGCATTGTTGTCCTATATGAACAGCTTCTCCGGTGGAAGTTTACTTAAAATGATACCATCGAAGTATTCACGATTTTGGCTCGCTCTGAGTATATTTTGGTGCATTTTGGCGCTTTTTAGTAAAGAACAAGGAATAACTGTTCTCGGAATTTGCGTTGTTTTTGATATCGTGCTTGTATGCAAGTCCAGTATGGAACATTTGCTGAGAGCGACAGCCTCACCAATCAAGTATTTGAGAACTTGTCCCAGATGGTTTGTTCGCCTTATTGAAAGACTCTGTATTATCGTTTCTACAGCTGTCATCCTCCTTTATTTGAGAATAGTCATCATTTCGGGTGGTTTTTCAGTTTCCTTCTCTGAGTCTGACAATCCAACATCATTTCATCGTGACATTTGGACTCGCTTTAGAACTTATTCATACTTATGCGCCTTGAACGCGAGATTTCTTCTGTGCCCCAACACTCTGTGTTATGATTGGTCAATGGATAGCATACCCCGGATTGAGTCGTGGAGGGACACGCGCAATGCGGAGACTTTAATCTTCACGTTGGTAATGGCGCTGTTGTCCTTTTACGGTTTGATACCTTCGAGGAAGAATATTTCAGCAACTGACGTTCCCGATAGATGTGATGTTAAATCAGCAACGTTTGATTGCAACCAGAATGCGTCTGGGCTCGATTATAACAAACACTGTGACGTAAAAGAGTCGCACTACTCAGATAAGTGCTGGGAAGATTTCAGCTCGGTTCAAAGAAAACGTGTGGTGCTTTTGGCGTTAAGCATGTCGGTGATCCCATTTTTACCGGCGTCTAATCTTTTCGTTCCAGTTGGTTTTGTTGTGGCGGAACGCGTTCTCTACGTACCTAGCATGGGAATCTGCATTCTTGTTCCGTTTGGAATTGCAGTCCTATTTGGCCGAACAAAGAGAAAAGTCACGCAGTATTCCTCCTTGGGTGAGGATCACAAAAGTCACGACGACACCGAAAAACAGACTTCATTCACATCAACACACCTAGCTTTTGGCGCCAACGCAGCACAAAGACTTATTATCTTCACTCTGCTGTGTACCTTTTTCTTCAAAGTATTTCATCGCAATTCTGAGTGGCTGACTAAGGAACGGCTTGCTAGATCTGGACTCAAAATCAACCCAGGAAACGCCAAGATTCACGTTACGCTGGGAAATGTTCTAGCCCTAAAGGGCCACTTGTCTTGTGAATATCACTACCGTAAAGCCTTGCGATTGAGGCCGCATTACGTCACAGCTTGGGAAAACCTGGGACTTGTTCTTCTTAACAAAGGCCGAGCCCAGGAAGCAGAGCAGTGCTACTTGAAAGCGCTGTCGCTCAATCCTGTGAGTGCAGATGGGAACATCAATCTGGCGCATTTGTTGAGAGTGACAAGCAGATGGCACGAAGCTGATGTCCAGTATCATAAGGCGCTGACATTAAGACCCAGTCACCCGCAACTCAATTATTTTCACGGTGTTGTGCTGGAAAAACTTGGCAAAATCAAGGAAGCAGAAAAGAAATATTTGAAAACGGCAGAATTGACGCCATCAGATGGGATTGCCTTCTTATCGCTTGGTAAAATGTTTGCTATTCCAGTCTTGAAGTCGAAAGTAAAAAATGGAAGCAGTGGAAAGTTGATAAAGAAGGCTGAAGGATACTTAAGGAAAGGACTGCATTTGAAACCTTCTCATACAGAAGGCCGCTTGTTACTAGTTCAAATTTATCTATTAAAGAACGAGTTAGACTTGGCCGAGGCTGAGGTTCGTTCTTTGCTCAAGTATGACCCAAACAGCAAAGAAGCGGAGTTTTTGTTGGCAAGGATTCTGGAGGCCAAAGGTTTGTTCAAAGAAGCGAGGAAATATTTCCATCAAGTGCTCAGAAAAGATCATCAACACATCGGTGCAAAGACTGCTCTTCAAAGACTGAATACAAGGTTTGATGGATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q3UV71	Protein O-mannosyl-transferase TMTC1 OS=Mus musculus OX=10090 GN=Tmtc1 PE=2 SV=2
Q6DCD5	Protein O-mannosyl-transferase tmtc2 OS=Xenopus laevis OX=8355 GN=tmtc2 PE=2 SV=1
Q5T4D3	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08409	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052384	Family	O-mannosyl-transferase TMTC	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR013618	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan