Detailed information of XP_074633713.1 in Acropora palmata

Genomic Location: NC_133890.1:21733779...21767295
NR annotation: XP_029187976.2, E3 SUMO-protein ligase RanBP2-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
H2QII6E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes OX=9598 GN=RANBP2 PE=1 SV=1
P49792E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2
Q9ERU9E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003153 (this species only)
Ubiquitin familyUBD|ZnF|NZF · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00638
all species →
Ran_BP1RanBP1 domainDomainInterproscan
PF00641
all species →
zf-RanBPZn-finger in Ran binding protein and othersDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045255
all species →
FamilyRan binding protein RanBP1-likeInterproscan
IPR000156
all species →
DomainRan binding domainInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001876
all species →
DomainZinc finger, RanBP2-typeInterproscan
IPR036443
all species →
Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23138
all species →
RAN BINDING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005096
all species →
Molecular FunctionGTPase activator activityInterproscan
GO:0005643
all species →
Cellular Componentnuclear poreInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0046907
all species →
Biological Processintracellular transportInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12172RANBP2, NUP358; E3 SUMO-protein ligase RanBP2EC:2.3.2.-
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074633713.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
82TPM > 0
2Conditions
43.3Max TPM
20.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 45 19.59 43.34
all_coral_tissue · baseline 38 37 22.30 33.41

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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