Gene detail

Detailed information of XP_074634006.1 in Acropora palmata

Genomic Location: NC_133890.1:4862303...4891616
NR annotation: XP_044166542.1, ATP-binding cassette sub-family C member 3-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074634006.1

ATGACAGAAGAAACTCTAAAGGTCTTAAAGGTTGTAGCAGTTTCTGTGCATGATCCTCATCATGTGGATGATTCTGAACATGATGATGCTGCTTTGACAGCCCCTGACATCGCCTCTCAGTTGCCTGTCAAGACAGGAGACACATTTGAAGTGTTTGGAAGAGATGTTAACTGGTGGCTGTATGTAAAACACCTAGAGAGTGAAAAAAAGGGTTATATTCCAAGCACTTGCATTGTTCCAATGAAGGAAGATGCTGCTAACGAAGAGAAAGAAGAGTTGGTTAATAACATGGAACCATCAACAGACTGGGCTGCCAATCTGAAGATGTTTCCAGAAGTACCAGAGGAAGAGGAGGGTGTGGACAGGGCTCAGTGTCCAGAGGAAAAGGCCAATATTTTCTCAAAATTGACTTTCTGGTGGCTAAATGGGTTGATCTTCAAAGGTTTTAAGAATCCCTTGGTAGATGGAGACCTCTGGGCTCTGGGAAAGAGTAACAGATCTGTGACAATTGTCCCCAAGTTCATGGAGAAATGGGCCAGGGAGGAGAAGAGATGTGCAATTGGAAAACATTGCCCTGTGGAAGAACAATGTCAACTTGAGCAAGCAAAGCTGAAAGAGGAGGAAAATGATGTGCATGCCGATACAGAATTTTTGCCCAAAAAAGATGAAAAGCAAAAAGATGAGAAGAAAGAGAAGAAAGCTTCATTGTTAAGAGCAATTGTGTACCTGTTTGGTCGACAGTTCCTGCTTGCAATAGTTTTGAAAGTGATTAATGACATCATTCAATTCACTCAACCACAGTTGTTGAACTTGTTAATTTCCTACACCAGAGACAGAAGCAATCCAGATGACAAATGGAAGGGATATGTCTATGCAATTGCAATGTTCCTCGTCGCCATGACAATATCGTTAGTCATTCATCAGTATTTTCAAATTGTGTTTGTTCTTGGAATGAAGATACGAACTGCGATTATTGGAATGGTTTATGCTAAGGCCCTTGCTTTGAACAACAGGTCACGGAATGAATCAACCGCGGGCGAGATGGTAAACCTTATGGCCGTGGATGCCCAGCGGCTTATGGATCTCACAACTTACATCAATGTCCTCTGGTCTTCACCTCTCACGATAATAATTGCATTGTATTTTTTGTATGACACGATGGGTCCTGCGGTTTTTGCTGGAGTTGGGGTCTTGGTACTCTTAATTCCTTTTAATATGGTTGTCAGCAGGATAGCTAGAAAACTACAGGTGAAACAAATGGAGGCAAAGGATAAGCGCATTAAACTGGTGAATGAAATTTTCAGTGGGATTAAGGTCCTCAAGCTGTATGCATGGGAAGAATCGTTTATGAGCCAGGTGATGAAAATACGTGCGAAGGAATTGCATCAACTCAAGAATGCTGCATACCTCAATGCATCATTTGCTTTCACCTTCACTTGTGCTCCGTTCATGGTTGCCCTTGCAACTTTTGCCATCTTTGTTTTAACTGGCAATGAGTTGACAGCTAACAAAGCATTTGTGGCTCTTTCACTGTTCAATATCTTACGATATCCCATCACTTTTCTGCCAAATGTCATCATCAGTTTGATACAGGGCAAAGTGTCCATTGACCGTCTTACTCATTTTCTCAATCTGGAAGAATTGGATCCAAATAATGTGGAAAAGACAATGCCAGAGCACATAAGTTCACAAGCTATTCATGTCGAAGATGGATCCTTCAGTTGGGATAAAGAAGAAGCTCCAATCTTGCAAAATATCAATGTTAACATTCAAAGTGGCTCACTGGTGGCAGTTGTTGGTGCTGTTGGCTGCGGCAAGACTACTTTACTGTCTGCCTTCCTTGGGGAAACAGAAAAAATTGCTGGCAAAGTCTATGTACAGGGTTCTGTGGCATATGTTCCTCAGCAAGCTTGGATACAGAATGCTACTGTAAGGGACAACATTCTCTTTGGAAAAAGCCTTGATCCTAAACGTTACTGCCGCACTGTGAATTCCTGTGCTTTAAGGACTGACATGGATATATTACCCGGCGGGGATATGACAGAGATTGGAGAAAAGGGTATCAACTTGAGTGGAGGCCAAAAGCAGCGAATCAGCCTGGCAAGAGCAGTTTATTTTGATGCTGATATCTTCTTGTTGGATGATCCACTCAGCGCTGTGGATTCACATGTGGGAAAGCACATCTTTGATAAAGTTATTGGACCAAGGGGAAAGCTGCGTAAGAAGACCCGTGTGTTTGTTACCCATGGAGTAGCTTTTCTGCCTCAAGTCGATCAAATTATTGTGATGCAGAATGGAAGAATCTCTGAGGTTGGAACTTACAACGAACTCCTTGAGAATGAAGGGGCATTTTCCGAGTTTCTAAAGACATTTGCGGCTGACCAACATGTAGAGGATGACGACCCAGGAACCAAGCAGGAACCAGCGTTGCCAGAGATTCCAGAGACCATTGAAGAAGTCGATTTTAGCCCACGAAGTGGAAGCTTAGAAGCACTATGGAATTCACGTGAAAGCGGCCTGCAAGCCCAGGAATGCGCACGTGGTGGGAGCTCCGAGGCTCTAGAGTGTGCACGTGGTAGTAGTTCCCAAGTCCACGAGTGCCCACGTGGTGATAGTTCCCAGGCTCTAGGCGTATGTAAGGCTGATTCATCAGTGCTGAGAAAGAGAATAGACAGAAGACTTTCAGTTGTCACCGTTGAAACGGTTGACTTGGATTGTCAGTTCATCAGGCCAGATCATGATGACGACGAAGACAAAATTATTGAAGTGGAGAAAGCTGAAACTGGAAGGGTCAGGTTTGCCGTCTTCTGGGCCTACGCCAAGTCTGTCAAGGTCTATCTGGCTGTGGCTCTGGTGCTTTTCATAGTGTTGGCGGAAATCGCCTCTGTGTTTTCGGGCATCTGGTTGGCGAGCTGGAGTGCAAGCAACGTCACATCCTCTGCTGAGCGTGACAGATATCTTGGTGGCTATGCCGGCCTTGGCGTCACGCAAGCCTTTTGCGTGTTGATGTCATCGTTATGTTTAGCTCTGGGATCCAAGATTGCGTCACGCCATCTCCACAAGAGCATTTTAGTCAATGTCATGCACCTTCCAATGTCGTTTTTCGAGAGTACTCCCCTTGGTAGGATCGTGAATCGCTTTTCCAAGGACATCAGTACAATTGATGATAAAGTTCCCATGTCACTGGCAAGTTTCTTGCGCACATTCTGCACTGTTGTGGGAACCATTATTGCCATCAGTTTTGCTACTCCGATGTTCTTGGTGGTGATAATCCCTCTTGGTGCTCTTTACTTCTTTATCCAGAGAATATACGTCGCCACCTCTCGACAGCTCAAGAGGATCGAGTCGGTCAGCAGATCCCCAATCTTCAATAACTTCTTCGAGACAATCAATGGAGCGAGTACCATCCGGGCCTTTGGTCAACAAGAACGCTTAATCCAGGATAATTACCACAGGGTTGATGAAAATCATGTGGCTTACTTCCCAGGGGTCTCGGCCAACAGGTGGCTTGCTCTGCGTCTCGAGTTTGTGGGAAACTTAGCCATCTTGTTCGCTGCTATATTTGCTGTGATTCGGCGCGACTCCATTGATAGCGGCCTGGTTGGGTTATCTATCACGTACGCTTTGCAGGTCACAGCCTCTTTGAATTGGATGGTGCGCATGAGTTCTGAGCTAGAAACAAATATTGTTTCTGTGGAAAGAGTCAAGGAGTATGCAGAGACTACTACTGAGGCTGATTGGATCGTCCCAGATAATCGACCTCCTGATGACTGGCCAGATCAGGGAAGCATCGTTATGAGCGATTTTGATCTCAGATATAGAGAGGGACTACCGCTAGTACTCAAGCAAATCAATTGCGATATTAAGCCGGGAGAAAAGATTGGTATCGTTGGTCGCACTGGTGCTGGCAAATCCACGCTGACTTTGGCTTTGTTCCGCATCCTAGAGAGAGCAGGAGGCAAGATTCTTATAGACGGCATTGATATTTCCAAGCTGGGACTCCAGGATCTGCGATCGAGACTCACCATAATCCCTCAGGATCCTGTGTTGTTCTCTGGAACTCTTCGTCTTAACTTGGATCCGTTTGATAGCCACACTGATGAGGAACTGTGGGGTATTTTGGAGCTCAGTCACTTAAAGAATTTTGTATCAGGATTAGAACAGGGACTTCTTTATCCTGTTACTGAGGAAGGAGGCAATCTTAGCGTTGGTCAGCGGCAGTTGGTATGTTTGGCGCGTGCGCTGCTCCGTAAAAGTAAAGTCCTTGTTCTTGATGAAGCCACGGCCGCGGTGGACCTGGAAACTGATGAGCTCATTCAACAGACAATCCGACGAGAGTTCTCTGACCGCACTATCTTTACAATTGCTCACAGGCTCAATACCATCATGGACTATACAAGGATTATGGTTCTTGACAAAGGCTTCTTAGTTGAGTTTGACACTCCTGAAAACCTCTTAGCTCAAAAAGGCATTTTCTACAGCATGGCACAAGATGCTGGCTTAGCATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F364	Multidrug resistance-associated protein 1 OS=Gallus gallus OX=9031 GN=ABCC1 PE=2 SV=1
Q8HXQ5	Multidrug resistance-associated protein 1 OS=Bos taurus OX=9913 GN=ABCC1 PE=1 SV=1
Q6UR05	Multidrug resistance-associated protein 1 OS=Canis lupus familiaris OX=9615 GN=ABCC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR005292 all species →	Family	Multi drug resistance-associated protein	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074634006.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074634006.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

51TPM > 0

2Conditions

13.2Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	29	3.22	13.18
all_coral_tissue · baseline	38	22	3.47	10.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.18
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.09
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.58
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.14
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.19
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.78
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.63
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.32
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.07
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.36
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.12
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.62
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.10
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.74
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.48
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.58
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.37
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.35
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.31
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.17
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.30
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.17
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.05
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.01
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.00
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.93
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.91
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.89
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.68
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.76
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.34
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.69
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.24
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.24
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.54
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.90
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.78
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.76
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.72
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.51
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.92
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.08
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.86
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.61
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.58
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.47
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.41
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.54
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.45
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.48
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.