Detailed information of XP_074634072.1 in Acropora palmata

Genomic Location: NC_133890.1:587771...631774
NR annotation: XP_029197955.2, unconventional myosin-VIIa-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q13402Unconventional myosin-VIIa OS=Homo sapiens OX=9606 GN=MYO7A PE=1 SV=2
P97479Unconventional myosin-VIIa OS=Mus musculus OX=10090 GN=Myo7a PE=1 SV=2
Q17LW0Myosin-VIIa OS=Aedes aegypti OX=7159 GN=ck PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000878 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00373
all species →
FERM_MFERM central domainDomainInterproscan
PF00612
all species →
IQIQ calmodulin-binding motifMotifInterproscan
PF00784
all species →
MyTH4MyTH4 domainFamilyInterproscan
PF00063
all species →
Myosin_headMyosin head (motor domain)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019748
all species →
DomainFERM central domainInterproscan
IPR000857
all species →
DomainMyTH4 domainInterproscan
IPR000299
all species →
DomainFERM domainInterproscan
IPR038185
all species →
Homologous_superfamilyMyTH4 domain superfamilyInterproscan
IPR051567
all species →
FamilyUnconventional Myosin ATPaseInterproscan
IPR036028
all species →
Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR000048
all species →
Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR029071
all species →
Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR014352
all species →
Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR035963
all species →
Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR041794
all species →
DomainMyosin VII, FERM domain C-lobe, repeat 2Interproscan
IPR001609
all species →
DomainMyosin head, motor domainInterproscan
IPR001452
all species →
DomainSH3 domainInterproscan
IPR019749
all species →
DomainBand 4.1 domainInterproscan
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR036106
all species →
DomainClass VII myosin, motor domainInterproscan
IPR041793
all species →
DomainMyosin VII, FERM domain C-lobe, repeat 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22692
all species →
MYOSIN VII, XVInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005856
all species →
Cellular ComponentcytoskeletonInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003774
all species →
Molecular Functioncytoskeletal motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0016459
all species →
Cellular Componentmyosin complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10359MYO7A, USH1B; myosin VIIa-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074634072.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
80TPM > 0
2Conditions
59.5Max TPM
28.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 44 29.64 59.50
all_coral_tissue · baseline 38 36 26.71 50.56

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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