Gene detail

Detailed information of XP_074634604.1 in Acropora palmata

Genomic Location: NC_133882.1:2567130...2610951
NR annotation: XP_044164313.1, pregnancy zone protein-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074634604.1

ATGATTTGTTTTGCTTTTGTTTTGCTTCATGCCGTGGTCTTCGTGGAAAGTGGTATCCTGGTAACATCCCCAAGACTTTACCGTGCTGGTAGCACTCAAGAACTAACTGTGAGCCTTTTTTCTGAGCCTCTACCATGGATTGTCAATGCAACTCTTGCATATTCAAACAGTATCATTGATACTGATGAGGGACAGTTCACAAGTCTCTCAGATGGAACTCTGAAACTGAAGGTAAATTTACAAAAACCGCAGATACCAAGAGCTTTGATTGGTCAAATTAAGCACGGGAAAGTCAAGTCTCTTCAGGCAAAGCTTACCATAATTGGAGGGCAACTGGGCGGAAGGCGTGATGACTTCCAGTCAAGTGAAATGATCACCATTAAAATTCCCAAGATTTCACTGTTCATCCAGACAGACAAACCTATTTACAAGCCTGGACAAACAGTGAACATGCGTATAATTGGCACGGATGAAAACCTAAGGCCGCTGGAGGGAAAGATTTCAAGACTAACTGTGAAGAATCCTAGTAATGTACGATTGATGCAATGGGACAATCTTGATTTTGTTGTTGGAATGGTTAGCCTCAAATTTCCATTGTCAAGCCAGCCTGATTTGGGAGATTGGAAAATTGAGGCAGTGTGCAAGGGTGAAAATAAGAAACAAACATTCAAGGTGGATAAATATGTGCTTCCAAAATATGAAGTCACTATTAAACCCCCACCATTTGTGGCACTCGTTGGAGAGCAAAACATTACAGCAACGATTTGCGCCCGGTACACATATGGACAACCAGTCAAAGGCAAAGTCTTTGTCAGTTTTGCAATGAAACGGAGTCGATGGGCTCATGAACGTCAAACAACAGTGGTAGATGAGATCAATGGCTGCAAGGAAATTTCTGTCAAGCCAGGCTTGTTAGGACTTTCAGGACAACATGGGCAAAGAACAGGAGGCACATTCCACGGCCCAAGGCCCAAATTGGTCATTAAAGCGACTGTGAGAGAGACGGCCACAAATGTCTCACTAAATGCCACTGATACTGAAACAGAGGTTGTTAGAACTACAACCAAACTGCAATTTCTGACAACAACCCCCAAAAACTTTAAACGAGGCATGCCGTTCACTGGGCAGGTGCTAGCCACTTTAATTGATGGAACTCCATTGAAAGGAGTGCCAATTCAGATCTCTGTCAAGGCTCAAACTTCAGATTATTGTAACTGGGAACGCTGGTGGTGGTCATGGGTTCCTGTGTGCAAACAGGTGTTTCAAGAAACCTATATTGTTCCTGCAGATGGGATTGTGAATTTTGTGGTTCCTGGTTCAAGCATTTCTCAACAGACCAGCTCTTTGAAAATTAAGGCTTCATACCGCAAGTCTTCAGCAAGTTTCACTGTTAACAAAGCTTGGTCCTCCCCAAGTGATAGCTTTGTTGAGATGGCAAGGCTTACTTCTCCTCAAGTGGTTGGATCCACTGCTAAAGTGACGTTTACTTTCACTGCCAAGCAGGAAACAGAAAACATTACTTTCCATTACCAGGTATTTAGTCGTGGAAAGCTGGTCACTCATGGAAGAAAACTTCATGTGATTGATAACAATAAAACCAAGACATTCACAAATTACAAAATGAAATCAATGTTCACTAGCCGGGGCTTTCTTGAGTTTAATGTGACCCATGAGATGGTCCCATCATGTCACATCTTGCTGTTCTATGTGAGAGAGGACAAGGAAACTGTTGCTGCAACCATGCAATTTGACACAGAAGCCACTCTAGAAAATGAGGTAAAGATACAATTTGCTGACACTCAGAGGCAGCCAGGAGAAAAAACCAGGCTCATTATAAAAGCAGCACAAGGATCAAAAGTGGCAATCACTGCTGTGGACAGAAGTGTTCATTTGTTGGAAGAAGGAAATGAACTGAGTGAGGCTGATGCAATCAAGGCACTGCACTCCCAAGATGTTGGGCCCCATGGAAGTGACTCCTGCTGGCCAACTGGTCTTTGGCCCTTCCGCCAAAGGAGATCGGCTTGGTATGGACAACCAAAGGACCTAGATTCTTCAAAGGCGTTCAGGGACAGTGGTGTCATTTACTTTTCTAATTTGAAGATAAAAACAGCAAAGTGTCGCGATTTTTACCCTTCGTATGAATATGAATTGGAAGCTGTTCCTTTGAGTCTCGGCAGACGAGTTAATGAAGGAGTATCGAGTATGATGTTAACAAGAAATGATGGTGATAATATAATTACGAAGCAATCCTCAACTAAAAGAAAGCCTGTCAATGTGCGTAAAGAATTTCCTGAGACGTGGCTTTGGACTGAGCAGGTGGTGAATGATAGGAGCGGTAAGATGGTACTTTCTGTCAAAGTTCCAGATACAATCACCAGCTGGGTTGCTAGTGCCTTTGCAATGTCGAACTCCTCTGGGCTTGGAATTTCAAAGCCGACTTCTCTTAAAGTCTTCCAACCATTCTTTGTTTCTCTGACATTGCCATATTCAGTGATTCGTGGTGAAGAGGTGTCCGTAATAGCGACTGTCTTCAACTATGAGAACAAGTGTCTCACAATTCGTCTGAGTTTGGCAGATTCCTTTAGCTACAGGATCACATCAGTTCATTCCTATGATCTTTGTGTATGCAGCAATGAAGCCAAGTCTGTGAACTTTGGCATTGTTCCTAAGGCCCTGGGTCAGGTGCCACTCTCTCTTTTCGCTAAAGATATCAAAAATTCATCGGCTTGTTCAAAAGACACCGCACAAATGCATCTTGGTGTGAGTGATGCTGTCATAAGAAAGTTGCTGGTTGAGCCAGAGGGAGTCCGCCAGGAGTACACCTACAGCACTTTTGTTTGTCTAAAAGATACTCAAAATGAATCCTATTTCAAGGATGACATCGAAATTTCACTGCCCGACAATGTCGTCCCTGGTTCTGTTTATGCAATAATATCTACTGTTGGCGATTTAATGGGTCCAACGCTTAAGGTAGACAGCTTACTGAGACTTCCCTACGGATGTGGTGAACAAAACATGGTGAACTTTGCACCCAGTATTTATATCGTGAAGTATTTGTCGAGTGTGGAACAACTCAGTGAATCAACCGAAAACAAAGCCAAGAACATCATGAGAACTGGATATCAGAGAGAGCTGACCTACAAACGCGATGACGGCTCGTACAGCGCTTTCGGAAAAAGAGATTCAGACGGAAACATGTGGTTGACAGCGTTTGTGTTGCGGTCATTTGCACAAGCGCAGCCCTTCATCTTTGTTGATCCAGCTGAACTGAGAAGCATCCAGACCTGGATAACTGGCAAGCAACAAAGCGATGGCTGCTTTCCCAAGCATGGAAGGCTTTTCAACAAATTGCTCAAGGGTGGAGTTACAACTGAAGCCACGCTGACTGCGTTTGTCACAGTGTCCCTTCTCGAATCTGGAATGTCATCAAAGAATGAGATCATCCAAGCAGCTCTTAATTGTCTTAAGAGTTCTTTTCAGTCAAACCTGACGGATTCCTACACTCTGTCCTTATTTGCCTACACGTTCACCTTGGCTAAAGATCCCCAAAGCTCGGTTTTATTCGCCTCACTTAAAGAAAAAGCCATCATAGAAGGTGGACTGATGCATTGGGAAAAAGTCAAGGAGATGTCAAATTCACGCTCCAACGAGTTCTTCTGGTGGAATCCGTATCTCCGAGCTCCAGCAGCTGATATAGAGATGACCTCTTATGCTCTTATGACTTATGTTCTTCTTGCTGAAGATGACCCCTCCATGATTGGTGAGGCCATGCCTATCGTCCGATGGCTTACTAAACAAAGGAACGCTCTTGGAGGATTTGCTTCCACACAGGACACTTGTGTTGCCTTGCAAGCTCTTAGCAAGTATGCCACCAAAGCGTATTCTAACGTCACATCGCTCACAGTTCAGTTGGGAAATAAAGGAGAGCAGTTTCGGCATACATTCATCATTACAGAAGAAAACAGAATGGTCTCTCAAAGGACTGAGGTCCCCGCAAGTATTCTGCCAATCAAGAAACTGCCATTCAAAGTGAATGGAGAAGGTTGTGCTCTGGTCCAGGCTGATGTGTCGTACAACATCCCGGATGTTACGGATGAGCCTGCGTTTGGTTTGAATGTAACACTCCAACCATCTGACGATATGTTTGCTCCCATGGCAACTCAGTCCGGTGAATTGCTCTGTTTGCCTCTGGAGATGTTCATCACCGCCGAGTGGCTGAAAGAAGGAACATCCAACATGGCAGTGGTTGATGTGAAACTTGTGTCGGGTTATCAGGTTGACGAGGATAGCTTGAAAAAGCTTCTGAATGTGCGCTCACTCGGCATCAAGCGGTATGAGATGGAAGGTCAACACGTGATCTTGTATCTCGATGAGATCGACAAGGTGTCGTTCTCGTTCAAGATTTATCAGTCCGCAGTGGTGAAGAAAACCAAACCAGCAGCTGTTACTGTCTATGATTACTATGAAACCGATCTCTCCGCTACAAAGATGTACAAAATCACCAAAGATTTGTGTGGACCTGATGAAATGCCATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63041	Alpha-1-macroglobulin OS=Rattus norvegicus OX=10116 GN=A1m PE=1 SV=1
Q61838	Pregnancy zone protein OS=Mus musculus OX=10090 GN=Pzp PE=1 SV=3
P20742	Pregnancy zone protein OS=Homo sapiens OX=9606 GN=PZP PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000509 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17791 all species →	MG3	Macroglobulin domain MG3	Domain	Interproscan
PF01835 all species →	MG2	MG2 domain	Domain	Interproscan
PF00207 all species →	A2M	Alpha-2-macroglobulin family	Family	Interproscan
PF07678 all species →	TED_complement	A-macroglobulin TED domain	Repeat	Interproscan
PF07703 all species →	A2M_BRD	Alpha-2-macroglobulin bait region domain	Domain	Interproscan
PF07677 all species →	A2M_recep	A-macroglobulin receptor binding domain	Domain	Interproscan
PF17789 all species →	MG4	Macroglobulin domain MG4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR050473 all species →	Family	Alpha-2-macroglobulin/Complement system	Interproscan
IPR041555 all species →	Domain	Macroglobulin domain MG3	Interproscan
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR036595 all species →	Homologous_superfamily	Alpha-macroglobulin, receptor-binding domain superfamily	Interproscan
IPR019742 all species →	Conserved_site	Alpha-2-macroglobulin, conserved site	Interproscan
IPR041813 all species →	Domain	Alpha-2-macroglobulin, TED domain	Interproscan
IPR011625 all species →	Domain	Alpha-2-macroglobulin, bait region domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR009048 all species →	Domain	Alpha-macroglobulin, receptor-binding	Interproscan
IPR002890 all species →	Domain	Macroglobulin domain	Interproscan
IPR001599 all species →	Domain	Alpha-2-macroglobulin	Interproscan
IPR011626 all species →	Domain	Alpha-macroglobulin-like, TED domain	Interproscan
IPR047565 all species →	Conserved_site	Alpha-macroglobulin-like, thiol-ester bond-forming region	Interproscan
IPR040839 all species →	Domain	Macroglobulin domain MG4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11412 all species →	MACROGLOBULIN / COMPLEMENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0004866 all species →	Molecular Function	endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074634604.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074634604.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

78TPM > 0

2Conditions

465.3Max TPM

74.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	45	96.70	465.29
all_coral_tissue · baseline	38	33	46.64	124.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	465.29
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	315.34
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	307.50
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	295.07
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	243.51
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	210.85
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	210.23
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	196.63
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	170.75
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	151.35
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	125.22
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	124.06
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	107.29
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	104.32
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.32
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.47
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	87.57
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	84.53
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.59
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.98
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.32
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.04
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.53
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.81
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.74
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.43
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.99
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.56
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.67
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.94
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.55
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.43
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.84
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.26
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.88
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.46
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.16
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.54
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.70
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.01
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.62
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.11
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.91
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.47
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.57
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	124.52
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	101.53
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	82.55
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	80.06
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	74.83
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.81
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.39
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.31
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.61
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.06
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.70
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.35
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	60.47
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.56
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.58
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.47
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.81
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.79
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.41
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.89
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.30
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.45
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.82
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.52
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.87
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.74
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.71
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.57
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.28
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.71
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.35
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.19
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.