Gene detail

Detailed information of XP_074634842.1 in Acropora palmata

Genomic Location: NC_133890.1:16773080...16781762
NR annotation: XP_044180132.1, LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 2-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074634842.1

ATGTCTTGTAAAAAGAAAGATAAAGAATCAGACGCTGGCGCTGTTCCATTGGACTTGCGCAAGAGAAGTGACGTAAACCCTGTGACAAAGATTGCTGAAGAAGTTCCAGAATTGGACCCTGTGTGGATTGAAGATGTGCAATTTGTTCCCTACACCCCTCCCCCTCTGTCTTCCTCTGATGTGGATCATGCAGCGGTTGAAGAGTTGAAAGAAAGAATAGAGTTCATCAATGATGATTTGAAATGGCTCTTGAGCCTCACATACAGCAAATTCTGGTGTCAGGTGATTTTTGATGAAAGTTTGCAGGCATGTCTTGATAGTTATCTCAGATATGCCCCAAGAAATTTTGACACCTCATCTCTTCTTCCGCCGGATTTGAGTATTCTTCATGCAGATGTGCACAAGAGGGTTTTTATGACATACGTGAGGATGTCAACAAACAAGGAATCCAAGGAAAATTTCATCACACCAAGTACATTTGGAGACATTTTGTACGAAAACTTTCTCTTTGATATTCCAAAAATTATGGACATTTGTGCCCTCTATGGAGGAGAGGACAATAGGAACACACCACTTCTCAGGAAAATGTTGCAAAATATATTTTCCAAGCAACCAAAGTATTATGATGACCTTGATATAACCATCTCAATGATATTTGACAAGTTAGAGGACATTCTAGAAAGATGTGGAATAAGGCCAAAAACAGAGGATTCCACAGATGAGCCTAGAAAACTTAGGGGTGTAAAAAATGGACCGAACAGGTGTCTCCCTGTTGAACAGGTGGAAGACATTGCACTATATTTGAGCGATACTTGCTTCACGGTGCAAGCGTTTGTGAGAACACTTCCTGACGTGACCCATTTCTTTCACAAACAAGACTTTGTACATCGAGTAGCATGCTTTTATGAAGACATTGTTCCATATTATGAACAGTATTCAAAGGACATTAGGTCAAGGACATTGAAGGAGAAGTGGAAACACAGCAAGACAGCGCTTGTTATACTTTGTCATTCCCTTTTAGATGCATGGTGTATAGAACCTATAAAAAGCAAGTCTGGCGAAGAACTAATTCAGAATTGCACAGAGAATGCTTTGGAGTTGTTGACATCAATTCTCTCTGAAAAAAGATTCGTAAGTCGCTATGATTCGAAATTCAGCATTAAGCAAACCTTGGACAAACTAGAGGAACTCTCTTCAGTGAGTTTGGATGAGACAAGAGTACAGTATATCTTGGATGCTGTGGACAGTGCAAGGAAGGCTTTCCCAAGACAATCAAATAATAAAAAGAAAAGTGTTCAACAAGAGAGAATTTCCCACAGAAAAGACACTGGCCAGCACTGCACTGAAAATGATGTGTCAGACCAAAATGGATTAGTTGAAGAAAGAAATGCAGGAGCAAGCTCAAAAACTGTTAGTGATGTGGAGTTATTTTCCTTGGTAAGTCACATTCAAGACCTGTTGCCGGGATTAGGAGATGGATTTGCAATTCTCTGTTTGGAAGAACTCAATTATGATGTTGAACAAGTCATCAATGTTTTACTGGAGGACAATTTGCCACCATCCCTTCAAAATGTCAACAGAAATTTGTCAAAAGACGAAGTGATGAAGAGTAGAACTCAACCTATGAAAACCATACTTGATGAAAGACACTCCATTTACGACAAGGATGAATTTGATGTTTTTACCAAAAGCAAGGTGGACCTATCTAAAGTTCATAAAGGCAAACGTCGCAACACAGCAAACCTGAAGAGTTTGTTGTCTGACAAAACAGACATAACAGAAGCTGTAAAGGAGCGATATTCTGCATATGATGTGTTTGATAGACATGTGCGCATTGTCACAATGTATGACGACGAGTATGATGACACTTACGACTCTCAAAATGTTGGAGCTCTGGATGCTGACTCAGCTGATGAACTAACAATTCGAAGGCCTTTTACCATCCCACGCATTTTGGGTGGATCGCCTGTGCCATCAGACCAAGAAGAGGAGAGTGAAGAAGAAATCTCAACAACTGAAGAAGGCAAACAGGAAACTGAAGAGGTTGTTGACAAAGCTCTGATAAATCGAAGATACCGTGGACCAAAAGGACCAAAGAAGGACAAAACCAATGATGAGAATGAAAAAGGAGGACAGAAGGGGGGGCCTAGAGGGCATGGAAGGGGTGTAAGCGCAACAGAGCAGAAGCGCAGAGCACACAATGAAAGGAATAAGGGAACCAGGGCAAATCATAACCGTAAAATGGGAGCAGCTGTTAAAAGAGGCAAGGGAATGGGTATGTTATCCTCTCGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H1I8	Activating signal cointegrator 1 complex subunit 2 OS=Homo sapiens OX=9606 GN=ASCC2 PE=1 SV=3
Q91WR3	Activating signal cointegrator 1 complex subunit 2 OS=Mus musculus OX=10090 GN=Ascc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006802 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR052586 all species →	Family	Activating signal cointegrator 1 complex subunit 2	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR041800 all species →	Domain	Activating signal cointegrator 1 complex subunit 2, CUE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21494 all species →	ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18667	ASCC2; activating signal cointegrator complex subunit 2	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.