Gene detail

Detailed information of XP_074635164.1 in Acropora palmata

Genomic Location: NC_133891.1:20071253...20105635
NR annotation: XP_044174205.1, LOW QUALITY PROTEIN: NFX1-type zinc finger-containing protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635164.1

ATGGATAATTCCGAGAAACTGACATTTGACCGCAAGATTTCTGGGAAAAATAAGTGCACCGTTTACTTACTGGAGTGGAGACATGGCGCATGTAAAGGAAACAACGTTTGGGTTTGTGCAACCGGAAATGATGATGATGAGTTTTGGGAGCATGGTAATGGGCAGCATAGTCGTCCTGGAGTGGATTTGTTCCAGCAAAACATTAAGCTTCAAGGTGTACTGGTGAGGAAATCTGAGAATTGGCTGAAGGCTTCTGTTTTGGTTAAAAAGGAAGGTCATGGTGAACAAACAGGACTTGGTGTGACAAGTGATTCTTTGCAGTCAGAGCTTGTTGTTAGCCTCCAGCATGAAGGTCAAGCTGGAGAAGGATTTCATCTGAAAGTGTCAGTTGGTGATATTATTGAGGTCACAAAATGTTGGAGAAAGGAAGGAGAGGCTTTGGAACCAGAGGTTGTCATGTGTTATTCCCTGAGTGATGGTGAAATTCAGTCATATCTAGAGTGTCTGTCAAGCTGTGTAAAGAGTGGTCATTCAACTGCAGCTGTGAATGAAATTTTGCGATGTCGTGCTGCTTGGAATTATGTCCTTTCAGGGTTAGGAAAGGAAAAATATGATGCAAATATCATCCATCAGATTTTAGAAACTGTAAACAAAATTAGCTCCAGTTCTCTAGTGTTGCACACAGTCAAAAAGATTGTGGAAGGATTTCAACAAAGCTCATTCTTTAAAACTATTCTACCAGATTTCATTGATGAAATCACTGAGGTGAATTGTTTTAGCCTTGTTCAAAATGTTCTGAAGCATGTGGTCTCTGCTGTTCCACAATCTGGCCTTCAGATTTTAACTTTGGCAAAAAAACTGGCTTATAAACAACTTGAAGTCTTTAGTGACAGTGAAACACCAAAAGTCATCGTGGACTTCCTTATACAGCTATCCATGATCATTGCATCAGAAGTACCTGGGGCTCGTAAAGATATCAAAGAGCTGCCATGGAAAAAACTCCCATTGATACCAAATGAAGAGGAGATGAAAAAGCCAAGATTGAAGACAGATGACTTGCCAGTGATTAAAGAAGACGGAAAGTATGACTCAGAAGATGATTACTTGAACACTTACTTCAGACTTCTTAGAGAGGAATGCTTCCATAAGTTGAGGAAGGGCATCAGTGACTTTGTTTCCAGTGAACAGAAATGTGATTCAAAAGATTTGAGGATGTATAGGATTTCATTGAAGGGAGCATCTCTTCGCCATGAAGATTCTCCAAGTGCAATGTCAATTGGTCTTGAGTATAAGGGGCTGGACACGCAAAGCAACAGTGATATGGAAGATACAGAAGGTCTTCTGTACGGAAACCTCCTTTGCATTTCAATTGATGGCACATTTCAAGAGCCTGTTTGGGCCGTGGTAGACAGATGTATTGCTAAGCAAAGCATTGTAGGGATCAATCTTTGTGAAAAAGGAAATGCCATCACTGAGCCAGAGTTTATTGCCAAGATGCAGGAGATCAGTAAAAGAGGCAAGGAAGCACTTATGGCTGAAAGCCAGACATTCTATCTTTCTTATGCTCCAGCTCTGGAGGTTTTGCAAAACAGAGATTATGTCCCATTCAAGGATTTTTTGGTTTTTCCTGACCCCGAGCAAATGAAACCTGCTGAGTACATCGACAAAATCAAATCTCCACCAGACTGGGGAATCATCTTTCAAAGAGACACTCTGCCTGAGAGAAGCATCCAAGATGAGCATTCTCAAAAGTACTCTTTGCTTGAAGACTTTAATAAATTGCGTTTGAACAGTAGCTGCAAACCTCTTCTGGATGAGTCGCAACTGGCTGCTGTTGAACTGGCTTTGAGGAACAAATTGGTCTTAATTCAGGGGCCCCCGGGAACCGGAAAATCCTATGTGGGCGTGGCTCTGGTCAGTCTTCTACTGTCCATGAAAGTACCCCATGATTATGGGCCAATACTGGTCGTGACTTACAAGAATCACGCACTGGACAATTTTATGGTGGATTGTGTTAAGAAAGTGTCTTCACCTGACGTGAAGATTGTTCGTGTTGGAAGAGTACGCGAGGATGCTAATGAAGAACTGAAAAAAATCCTGTTGAGACAGGTGGGACGTGAGTGGCCACAAAGATTGTACAATCAGAAAAGAAAGCTATTGGGCCAGATTTGGGCATTACAACCAGAAGTGAAAAGGGCATTTGAGAAGCTGAGATATTCAAGCAGTTTTACTGCAGATATGTTCTTGAAGGAAGCACCAGCATCTCTGCTAAACAGCCTGTTGATCGGACCACAGCAAATAAAAGATCCAGAACTGGACGGCTTGATCAAGGAAAGACCTAGAACTGAACCCAGGCTCAGAGAGATGGTTCAAAAAGCTCTCCTTCGTTGGCTTCCCTCACAAGAGCGGTTCGATAGCATTGCTCAAACAATGGTAAATGAAAAAGGATCCTCACCAGAAAACAGCTCCCCCGGGAAAGGCAAAGGAAAACAAGTGGAGGACCAGGGTCAGGTGGAAAATCCCAGTGATTTCAGTGATCCATCAGTTGAGAAGAATGAACGATTTCTTGCCATTGATGAAGAAATTACTGATGATGACGACAGAGAGATCGCCGCAGAATTAAAATCTCAGGCATCTGGAAGCTCTCCTGCGATTGAAAGTCTGCGTTCCCTCGTTTGCATTGACAAATCAAAGGTGGAATCATTTGAAGATCTTTTGAATGTCTCCAATGTTTGGATGTTGGAGAAACGTGAAAGGGTACGGCTTGTGTACGCCTTACAAAGCAAGTTCTACGAAAAAGCCAGTGCCGAGTTCTTGAATGTCAGTAATAGCTATGCAGAGTTGCACCACCAGCTCAAAGAATTACGGAATCAACACGATATTGAAGTCATGAGGAAATGTCATGTGATTGGAATGACGGTCACAGGTGTCTCAATGCGGGCGAACCTACTAGATGATATTAAGCCTTCGGTTATGATCGTGGAAGAAGCTGCAGAAATTCTTGAAGGACAACTCGTCGCTGTGATTCCTCCCTCCGTTAAACACCTGATCATGATTGGAGATCACAAGCAACTGAAGCCAATAGTGCACTTCATTAGATTAAAGAAACGCCACCATTTGGACTTGTCCATGTTTGAAAGACTTGTGAACTGCAAGCTGCCATTTATACAACTCCGATACCAATGTCGAATGAGGGATGAATTCGTTGACTTGCTTCGTGAACTAAAGCTATACGAAGAGCTCAAGACGAACGAGGAGCTTGTGAAAGGTAACACCATACCTCCTTGCGTGACCCGAAGCATGTACTTTTGTACACACACCGAGTGGGAGACGGAGGATAAATTCTCGCACAGCAAACGAAATCACCACGAAGCCAAGAAGATTACTGAAGTTGCCAAAACCTTCTGTCACGTAGGAGGCCTTGCACCATCAAAGATAACGGTTCTGTGCTCTTACCGCGGACAGGTTCTAGAGATAAAGAATCGTTTTCAATATACCAAGATCCCTGCCCTGGAAAATATCACAGTGACGACAATTGACAGCTTTCAGGGGCAAGAAAACGATATCATTCTAATTTCTCTGGTCCGCTCGAACAAAGAGGGAAAGATAGGGTACTTGTCGCAAATGAACCGCTTGTGTGTAGCAATATCTCGGGCACGTTGTGGTTTGTACCTGTTCGGCAACCATACACAGTTGGGGAGAGCCTTCGCAAAAGGCTGGAGGGTTGTCAGTGACGCCATGCGAAACAAGGGTTGTCTTGGTGCAATGTTTCCATTTCGATCAAGTGAAGATCCAAATGTTCCAAAGCAGGGAGAGAGTGGACCCGTCGGCAGTTCCCCTACTAGAGAAACCGAATCCAGAAACGGAAACGTCAACATCAACATCTTTGGTCCGGCTATCTTCGGAGATGGCCAATCAGTGAATACCATTTCTACTAGAAACGATGATCCTCCAGCCACCGCTTCTCGTCCTGCACGTTTGCAAGTGTTGTCTCCTGCATCTGGGAAAACACCTGTCCAGGACCCAATGACACCAACGGGGTATCGACCACAAGGACAGGGCGCGTCACCCACTCAAGAGGCCGGGTCAGACAGTTGCGAGATGGTAGCAACCACCAAGGGTGCAAGAGAGACTATCCAAGAGTTAAAAAAATGCGAGGAAACGAAGTTCCACGCGCCATTGTCCACTCAGGAGGCCGGGTCTGACACTCGCGAATCAGAATCACCGACCAAAGACGCAAGAGAGCCAATCCAAGAGGTTGAAAAATCCACGGAACCGGAGCCTCTTGATGTAGAGGCAGGATCACCGACCAAAGAGGCTAGAGAACCCATCCAAGTTACCACCTCCAAAGATGGGGCTAAAGAGGAAAGGTCATTCATCTCCAAGGAAGAGGCAGCAACCGTGCAGGCGAGATTGCCCGCCAGTGATGCACAGGCACTGATTCAGGAACTGGAATCACCAACAAAGGAGGCCAGGGATCCTATTGAAGAGGTCAGCCCGCCCAACAAAGAAGCTACCATGTCTACTGAGGAAATATCAGAAGGCGAAGGATCTCAAGGTTTACCTGAAATGGAGGGCTATACAGAGAGCCGCACCCAAGAATCGATGAGCCGACGATTGGACGGGCAGTTGCCGAGTGAAGACAGATCGATAAGAAGCGCTGTGGAGGAGAGTAAAGTGACCAAAGGCAAAGAGGGTGAACTGGAAGTTGTTCCCGGTAGAAGACAAGTTTTCCAGGAGGGTGACTTGGAAGACCTCTCTAAAGGTAAGAAGGCAGCTAAAGAAGAAGAAGCTTTACGGAAAGAAGAGCAGGATTTTGAAGAATTCGACAAAGGGAAGCCATTACAAGAGACCCAGGAAACTGGTAAACAAAAGGAAGAACCATCAGATGAGAAACCATTGCAAGAGAGCGAGAGTACCTCCGAAGTGAAGAATGAAAGTCCCAAGAAAGATAGCGCACCCGCTCAGGAGAGCATGGCCGCGGGCGAGGGACCCTTTGAAGAGACTGGACACGAAGAAGGAAAAGCTCTGGAGGAGACACAGGGTAGCGTAAGCAAGGACCATGGCAACGCCACGAAATACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R151	NFX1-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3
Q9P2E3	NFX1-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=1 SV=2
O74465	Helicase required for RNAi-mediated heterochromatin assembly 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hrr1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001090 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0031048 all species →	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635164.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635164.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

78TPM > 0

2Conditions

39.9Max TPM

18.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	41	15.82	28.11
all_coral_tissue · baseline	38	37	21.78	39.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.11
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.63
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.47
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.45
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.37
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.01
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.02
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.56
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.65
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.54
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.21
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.21
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.10
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.59
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.02
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.88
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.81
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.11
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.95
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.55
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.98
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.93
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.91
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.27
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.95
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.68
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.57
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.57
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.13
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.05
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.91
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.84
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.94
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.48
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.76
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.65
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.59
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.36
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.94
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.80
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.95
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.90
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.94
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.75
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.48
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.04
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	30.33
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.79
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.27
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.30
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.09
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.86
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.51
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.30
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.55
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.53
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.13
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.58
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.93
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.29
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.53
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.20
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.09
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.89
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.04
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.84
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.10
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.09
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.28
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.00
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.79
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.77
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.49
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.22
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.21
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.00
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.58
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.