Gene detail

Detailed information of XP_074635216.1 in Acropora palmata

Genomic Location: NC_133891.1:17763535...17807923
NR annotation: XP_029199195.2, VPS10 domain-containing receptor SorCS1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635216.1

ATGGCTTCTCGTTCGAGACTTTGTGTTTATCTTTTCCTTGGGGCCTTGTTCCCGACGTTTGCAAATTGCATTCGTCCATTCAGGGTTCCAACGAATCTCTTCGTTCAAGGCACTTCGCCGCATACTCTTCCAGAAGGAATCAGAGAATTACGTCGTGATGTTCGCGAACCAGAGGAAGGAATCCCTGATGAGTATGCAGAAACTTTTGAAGGGTTGCATAATCGATTTCGGCGTTCACTTACCGAAACTACCCCAAACATTACCGTTCAAACCATTGGAAGTTTTGACTCTCTTTTTATGTACTGGCCTTCAAATTCCGGTAATGAAAACGTCGTCTTCCTTCTTGGCAAGACGAAAAATAAAAGCACTGGCAAAATTATTAGTAGCAAGGTTATGGTGTCGAAAGACTACGGCAAGAGCTTCACAGAATGGGTTGGCAAGACTCGGACCAGAACTCCAGGTTCACCACCATTGATCGATCAAATCTACTGTTCCACCGTTGATCCTAAACTCTGCATTTTATCAGACGTAAAGAACAAGAAGATTCATCACACAGAGGATATGGTGAATTTTACAGAGAAATCTGTTGTATTTGTTCCGTCCTACATCACGTTTCATCCATCCAGTGCCAAATTTGTCATGGCATATGACAGCACCACAGAAAAGCTTTATTGGTCGGAGGACAAGGGTCTATCGTTCAAGTTGCTGTCAGGGAACACTAAGTCATTTCACTGGGGAATAGAAGGCATTCACAGTCCTGAGACAGTATTTGTGGAAGTTTTTAGTGGAGACCCAGGTACAAGGTCAGACAATAAAACGTCTGTTAAGATGTATAAGAAAGGGACGTCCCTGACAGTAGTTGCAAGCAATTTGGATGAATTTGAAATCATGAAAAATTACATGTTTATCACTCAAACGATTTCACAGGATAAAAATCCCATTATGAAGGTTGCCAAGATTGTCAAAGATGGTAAAATAAATTTTAAAACAGCACAATTTCCAGTGAATGAAGAAAGCAGGGACTTTTTTGTGTTTCTTGTGGAGAATGATTTTGTGTTTGTTGTCATAAACCACTTGAGAAATTTGTCCAACTTATATATATCTGATACAGAGGGGGTGAAATATCAACTATCCCTCGCAAGGGTCTTGTATCATAACCCTTTCACAGATGTGTCATCTCCTTGGTTAAGAACTGTTGTACCTTATGCATTTGTTGATGTGGACAAAGTCAAAGGCATGCGTGGAATTTATGTGGCGACTCAACTGACTCCTGGACCAGTGGGAAAGAGACATTTATTGTCCTTAATAACCTATAACAGAGGTGCTACATGGCAGCGGATCCCATCGCCAACTAAGGATATTCGAGGGGGGAGAATTTACTGTTACCCTCCTAGCTGCTCCATTCATGTTAACCTCTTGTATGGTGCTGTGTACCGTGTATCACCATCTGATCGAATGATGACAAGTACGGCTGCACCTGGTCTGGTGGTAACATTAGGCGTTGCAAGTACTAATCTCAAGATTTACCCTGATCTGTTTATGTCATTAGATGGAGGTTTTAAATGGGAGAGGGTGCTGCGAGGAAAGTATGTTTTCACTTTTGGTGACCATGGAGGAGTCGTTGTCGCTGTTCCCTTCAGGCGTTACACCAGGATCTTAAGGTATACCATTGATGGCGGAGCAAGTTGGAGATCACATATCTTTAGTCGGACGAGTATACTTGCTCGTGATGTTGTTACACAACCTGGTGAACGTTTGCCTATCTTTGTCATTTATGGATTGGAAGGAGGTAGAACAGGCTCGTGGAAAGCTTTTCACATCAACATGACAACTGTATTGGGTCCGCTCTGCGATGAGTCTGGATATCTCAGTTGGACAGATAAATGTCTTCTGGGTGGACAAAATTTGATTCAGTCAAGAAACTATTCAGTCTACTGCCACAATGGACGAAATTTCAGTCGAATCTTGTCGTCTATGAACTGCCCTTGTACCAGGGAGGATTTCCAATGTGACTATAAGTTTGAAAGGAAGGAGGCTGAACATGAACGTTGCACTTTGATCAAACAAAAAGCTGTAGATTTGATAAACCCTCTTGTTCCCGAAAACTGCTCTGAAGGCCAATACTATATGCGCAGTCAAGGTTACCGCAAAATTCCAGGTGACACCTGTGTGAATGGCTCTGAGGCTGACTACATGCCTGTGTCAACACCCTGCCCTATTGAAGTCCTGAAAGGTTTGGACCTGTCATGTGGAACAAAAACTAAAGTTCATTGTATAGCATTACACATTGGAGACACTGCCTATTTTAATACTTCGCTTCAGAGTGGTTACATTCCAAACATTGATTTTGGGTGGTCCTATGGTGATGAGCATAATGAGTCAGGGCATGGAGTGGACTTCGCTTCACGGAGTCATATGTTTCATGAACCAGGAACATTTGTTGTAACTGTAGTTGCATCAAATTCTCGAAGCATTTTGGTGCAGTGGTTGAAAGTAAATGTCAGAGAAACCTTGCGTGCAGAGAGAGTCAACATCAACTTTAGCCCTAAAAATCCTGAGCCAAATGAACCTGTCACCTTTTCTGCAAATTTAAATTACTCATATGAAGAAGTTGGCAATGTACAATATAGCTGGGCATACGGTAATCAGCTCATTACTAGTATGCATCCAGTTGCCACTCTTGTCTTCAAAAAAGCAAAGAATTATACTGTGCACATGTCCCTTGACAATTGCGTGAGCACCATCCACAAGAACTTGTCTGTGCAAGTCACCCTTGATCTTAATGTGTTGAATATCAGTTCCAGAGCATTGAATCCTCAGAGTATTGAAGTCAAATGGGAACCTCCTAAAGGGGCAGATAACTCCATAACTTACAAGGTTTTTCAGAGTACTTTAGGATATGGTTTCTTCCAAGGGATCACCTGTGCAAGTAGCGAAAGAAGCAACACATCTTGTACAGTCAACAACCTGACTCCAGCCACAACTTACTACTTTAAAGTTCGGGCAGTTTCCGCTAGCGGAGAATTTGGACCATTCTCAGACATAGGGATTGCCACAACAACCAACATCCCTCCTGGAAGGCCAGGATACCTGCGAGCATTTGCCACCTCTACATCCATAATTCATGTAGCTTGGGAAGCACCCCAAGGGAACAATGTGCAGAAATACCAAATCCGCTATTGGTCACAGATAGATGTTGCAGATGTCAAAACCATTAATAATGATAAGCGCACAGAAAGGGACATCACTGGTTTAGATCAGGACACTTACTACTTCTTTGAGGTTTATGCTGAAAATGCAGTTGGGCCTGGCCCGACTGCTGGTCCAGTTAGTGCTCTGACAAAGTTATCAAAGCCAGCTCTTCCACCAAGAGATATTCAAAAGAGTACACAAAATCGAACATGTCTAAAATTGATATGGAAAGCACCATATCACTCAAGTGTGGACAACAGAACTTTCCCAGCAAAGGGCTACAAGGTAATGGTGAACGGTGAAACTCTGGATGTGCCTTCAACATATGCAACTATCTGCAATCTCATTCCAGAAAAATGTTACCAGGGAATTGTTCTGGCTTACTCTCACTCTGGTAATGGGCCTGCTGCTGATTTTAATGTCTCCTTGCAAGGAATGAAGGCTACTGTCCCGCGCAGTTTCCACAGCCTGGTGTTGTCTCCGACAGAGGTAAAGCTGTCCTGGGGCCCAGCTCCCAATGAGAACTCCAGAATATCTGGGTATACAATTTACCAGGTCTCTACAAAACCAGAAAAGACATACTCTGTGTCAGGGGACAAGACTAGCTTTAAAGTGACAAAACTTAGACCATTCACCAAGTACCAGTTTCAAATTTCGTCCAGAAATAACCTGGGTTCAAGTCCAAGGAGTGAAGCCTTGGAAGTTCTTACATCTCAGAGCAAGCTGAAAGATAGAATGCAAACCCTGCTAGTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95209	Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1
Q92673	Sortilin-related receptor OS=Homo sapiens OX=9606 GN=SORL1 PE=1 SV=2
P0DSP1	Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00801 all species →	PKD	PKD domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635216.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635216.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

84TPM > 0

2Conditions

349.3Max TPM

168.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	153.75	309.00
all_coral_tissue · baseline	38	38	185.48	349.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	309.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	290.21
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	289.45
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	283.73
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	283.69
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	274.76
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	273.57
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	267.59
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	263.46
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	261.91
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	253.31
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	233.99
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	229.69
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	229.03
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	226.10
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	213.51
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	209.72
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	203.61
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	199.96
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	195.12
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	176.27
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	169.59
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	163.32
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	160.86
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	158.32
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	154.07
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	153.73
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	138.09
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	136.04
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	95.07
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.62
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.69
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.27
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.81
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.25
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.99
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.99
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.97
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.74
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.92
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.64
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.33
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.35
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.67
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.35
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.05
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	349.32
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	310.69
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	300.09
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	289.24
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	286.27
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	268.30
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	267.82
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	262.27
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	261.40
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	247.46
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	244.48
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	240.36
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	235.16
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	229.53
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	224.97
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	223.75
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	219.53
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	216.41
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	216.08
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	212.08
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	212.07
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	212.04
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	211.48
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	208.65
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	187.63
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	172.73
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	157.50
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	105.31
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	103.49
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.17
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.95
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.48
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.89
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.62
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.54
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.55
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.80
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.27

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.