Detailed information of XP_074635222.1 in Acropora palmata

Genomic Location: NC_133891.1:17910515...17927672
NR annotation: XP_044174071.1, transcription factor AP-2-alpha-like isoform X3 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P58197Transcription factor AP-2-alpha OS=Rattus norvegicus OX=10116 GN=Tfap2a PE=1 SV=1
P34056Transcription factor AP-2-alpha OS=Mus musculus OX=10090 GN=Tfap2a PE=1 SV=2
A1A4R9Transcription factor AP-2-alpha OS=Bos taurus OX=9913 GN=TFAP2A PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004315 (this species only)
Transcription factor familyAP-2 · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03299
all species →		TF_AP-2Transcription factor AP-2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013854
all species →		DomainTranscription factor AP-2, C-terminalInterproscan
IPR004979
all species →		FamilyTranscription factor AP-2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10812
all species →		TRANSCRIPTION FACTOR AP-2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0042127
all species →		Biological Processregulation of cell population proliferationInterproscan
GO:0048856
all species →		Biological Processanatomical structure developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09176TFAP2A_B; transcription factor AP-2 alpha/beta-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635222.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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