Gene detail

Detailed information of XP_074635246.1 in Acropora palmata

Genomic Location: NC_133891.1:9584242...9598864
NR annotation: CAH3120340.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074635246.1

ATGTCGGTGCTATTTGACGCAAAAGAAGGGAAATTAACACCTAAATCTCAAAGAGCGCCAAGGACGAGGCGAAAGGAAGATGACTTGCTCGTTTTCGGCTACGCGTGCAAATTGTTTGAGCATTGCACTGAAAGATCTTCGGTGTTTGATCCCGAAAAGCACCTTATATCATGGATGGGTGATGAAACCCTTCGTATCGACAGATATGATGCCCGTCTTCACTTCACCGATAAGGGGCAGTTTACTTGCAAGCCATCTGACCTCGCTTCCTCACTCACACCAGAGGAAGAAGCAATAGAGAGGCAATGTGATGAAGAGAGGTACATGGATCTTCACAGAGACATGTCTGAATATGAAATACAGCAAGAAGAAGAAATGAAGCGTTTTCAACAAGCCCTTCAACAGGATGGAGCTTACAATTCAGCAGGATTCCAATATCAGTATGATGCTATGGAGAAGACATATCTGTATCCACAAAATCCCAATGGTTATGAATCATTGCAAAATGAATCAGAAGTATATCATGTCCAAGGAGGCAGAGATATTTCTGAACTGAATGTTGACACAGCAAGGTCACATGTTCCAGTTTCTTGTGGTCCTGCACCTCCTACTCCTCCTGTGTTTCAAGAACCAGAGCCTTTTGTTCCACCCAAGGAACTGGAAGTTCCAAATGGAATGGAGATTCCTCAGACTGCCAAAATGCAAGCCATCATAGAGAGGACAGCTGTTTTTGTTGCTAAGCAGGGAAAGCAAATGGAAATCTTGGTCAAAGCCAAGCAATCAGGGAATCGTCAGTTTGACTTTCTGCTCATGGACAACTGGCTGAATCCTTATTACAAACATGTGTTACAATATGTGACTGAGGGAAAGTATGTCCCAGAAATTCCAAATACATCAACAGCACAAACTCAGGAGGAGACAAAAGAAACAAAGGAAAGTGACAAGGAAGATAGTGAGGATGATTCTGATGGGGAATATGAATTACATCCTTTGCTGCAAGCATCACTTCATAAAAAGATAACAAGATCACAGCCGACGTCGGCATCATCTTCACCGCCAGCACAAGCTCTTGGCAATAAATTTAGTCAAACTTTTGCTCCAGTCACAAGTGGTTTAAATTCAACAGTTTTTCCACATGATCATGATGGTACCAACATTACTGATTTGAGTGGAGCAGATACTACTTATGACTACAGCATGTGGTATCCACAAGATGACGTGCAAGGGCTGTATGTGCCCTCTGCTGGCTACTCATACCACCCCCTTGTTTTACCTGTACCCTCAGTTGCCGATATGATTCCAGCCCCTCCCCCACCACCTGGTGAGGGGCCCCTGGAAGAGGAGTGGTTAGAGGCTTCTTCATCTGTTCCTCCACTGCCACCACCACCACCACCCCCACCCCCAGTTCCACCAGGTCTCCTTTTACCAGAAGCTGTTGAAACCCCAGGGGTATGTGCCCCCTCTTCATCTCTCGGTGTATCCAGTATGTCACAATTACCACAGCCAATCATACCACCCCCACCTGATCTTCAACCCATAGTGGACAAGTTAGCAATCTATGTGGCCAAGAATGGACCAGACTTTGAATCAATTATCATTGCTAAAAACGACCCTCGCTTTGATTTCCTGGACCCGTGGAACACACATCACAGTTATTACAAGCTCAAGAAACAAGAAGCAGAGAGACAGTTACAGCTGGAAAAGGCTGCAAAAGCACAAGAAAACCAGAAAAATCTGCCAGAAGTGTTGAAAGGTCCAATTAGTTTCTCCATAAAGACAAAAGTTCCAAAGAAACCAAAAATAGAGTACAGAACAAGCGTCATATACAAACAAAGCCTTGAGCAAGAGGAGAGTGATGAGGACGGTGCTGCAGAAGTATCTGGAGCTGAGAGGCAGGGAAAGGATGAAGGAAATGGAAAACAACCAGAAGAGAACACAAGTAATGAGGAGAAGCAACAAGCTGAGGATGAGATGGCAGGAGATTCGCTTTCACAACAGATGGATTCTATTAAGGCTGCAGAGAGAATTGCTCAAAATCTGGAATCAGAGTCACGAGACAAACAACTCCAACTTGAAAGAAGGAGGAAAGCATCACTGTTCATCAGCATGCTTAAGAAAACTAACCCAGCAGATGAATTGGAAGCAAATGAGTCTTCCCCCGAAGATTCAATCAAGAGGACAAGAAAGTTCATGGAAGCTAGGTTCGACTTTCCCCCAGAAAAGAAAATTCGCACTGACAGTGATGGCTATGAAGATGATTTATCAAGTGGAGGCGTTGGAGCTCCATCAGCTGGCAGCATCCGTGTAACTCAGGATCTAATGGCAAAAGTGTTGGCTGCCTCTAAGAACAAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q12872	Splicing factor, suppressor of white-apricot homolog OS=Homo sapiens OX=9606 GN=SFSWAP PE=1 SV=3
D3ZTQ1	Splicing factor, suppressor of white-apricot homolog OS=Rattus norvegicus OX=10116 GN=Sfswap PE=1 SV=1
Q3USH5	Splicing factor, suppressor of white-apricot homolog OS=Mus musculus OX=10090 GN=Sfswap PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09750	DRY_EERY	Alternative splicing regulator	Domain	Interproscan
PF01805	Surp	Surp module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035967	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR000061	Domain	SWAP/Surp	Interproscan
IPR019147	Domain	Suppressor of white apricot, N-terminal domain	Interproscan
IPR040397	Family	Suppressor of white apricot	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13161	SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0000395	Biological Process	mRNA 5'-splice site recognition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24774	FNBP4; formin-binding protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala