Gene detail

Detailed information of XP_074635353.1 in Acropora palmata

Genomic Location: NC_133891.1:1551226...1559711
NR annotation: XP_029194195.2, uncharacterized protein LOC114960111 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635353.1

ATGGCATTACGATTGCACAACACAAGGCTGTTAGAAGATCACAACACTTGCTTCAGTTTTGTCTTTGAAGACTTTCCTAACATTGGAGGAAGTGTATACTCCAAGCCGTTTTTTTTTGCCTCTTCCAAATGGCGTTTTCAAGGCGGTATCAAGGGGGGAAAGTTCGGTGTGTTTTTACGGTGGCTTGGCGGAGGCCAGCACACTGACAAAGTAAAATGCAAGGTTCGATGCACTGTAGAAGTTATCAATACCATGGATCCGTCAAAGTCTGTAATTGCTGGAAATGCCAACGACGAAGACGAGTTCCCTAAAGTTGGTTTCGGAATTGGCTGGAGTTCCTTAATGCGAACAGAGGACGTTCTGAAGGCGGATTCAGGGTTTTTGGACGAGAATAACTTGTATGTTGAGATTAAGTGTTCACTTGTGAACATTGTCTTTGAAGACAAATTGGTAATAAATCTCTCATCTCGCACAAGCTATGTCACCAGCTCAAAGTTTTCCTTGTGTGATGAAGAATGGTATCTGGTGTTGTACCCGAAAGGAGAACCAAAAGGCAACAGTGAACAAAATGCTGACTTCGCGGCTGTGTACCTACACAGGGAAGAACCTTCAATGTTGCGATTTAAAGTCGCCTACTCAATTTACGTACGAGGAGGCCGCGAAGTGGAAATCACTCACCATTTCTGCGACACTAATGCCAGCACAGCGTTTGGCATTGAGAAGTTTGTTCGCACCAAAGATCTTAAAGCTATCTCTAAAGGAGGCATGATAACCCTTGGTGTCAAGATCACAAGCATCCAGCCTTACTATTACTTTGGTTTTGACACCAAAGACTGGTCCCCACCCAACATCATGGGGGCTGAGTGCCTCATTGATGACGTGTCACCCTATGCTTTCAAACCAAGCACCAGTGACAAGAAAACCCTGGATTTTAGCCTGATCTTCGATCCCAAGAGCAAGCACAAAGATTTGGAAGATAGCGCGTATTATATGAAGACTTTGTGGAGTGTTCGTTTGTTCTGCTTCAAGGATGACAACAGAAGCGTTCTGGTGAACTCTTGGGATGTTCTTGGTAAGAGTGCATTTTGTTACAGTCAAGATGAGAGGGCCATGAACACAGCTTTGGAATTAAATGAGGTATTAAACCCTCACAGCCCCTACTTGGATGATGAAAAACATCTGTGTGTTCAGTTGGTGATAAATAATACCAATGAAGTTTATGATCCTTTGTTAATTAACTCGGATAAACACAGCATCGCAAAGCTGAGGGAAATGAATGCACAGGCAAAGGCTGCGGTTGAAAACTTTTGGAAATTTCAACTTGAAAACGTGACTTCAGAAAAAGATCAGCGACTGGCAGATAAAGATGAGGAGATAGCAGCCAAGCAAGAGGAACTAAAGCAGAAGGAACAAGAAATCCAAGCGCTGGAGAATGAGATCAGCGAGAGCAATGAATACTTGGCCGAGATCGAGAGTACTGTGGATGAGATTGACGGCAAGAAAGTAAGCAGCATCAAAGATCTTGTCCAAGAAGCTAAACCGGAAGAAGAGCAACTTAAAAAACAGAAGGAAGTCGTGGACAAATTAACTGCATTTATGATGGAACAACTGCCATTTAGCGTCAGCCGTATTTCAGTGGTTAGTAGTGCCGGGCAGGACACGATCATCAATGGAAACCAGGAAGTGGACTTGGCAGTGTTTGTGAAAGACCTTCCCAGAACAGAGCACAAGAGTTGGTTGCCGGCAATAGTTTTTACTATCAAAACACTGCTAAAACAAGAAGTATCCAAAACTCCTGACAACAGAGAAGACGAAGAGAGTACAGTCAACAAATTGCCACCATGTTCAGACTTTATGACTACTCAGACAACCGTTCAATTCAAATGTGATGGCATTGATGTTACTCTCATACCAATCAACGACTGGGAACCAATGGGAGGGTTCACAGCATTGTACAAACAATGCATGAGTCAACCAGCAGATGCACAAATGTTTTACAATGTGGCTGTCTGCGAAAGACAAACTGAATTTATTGCCATGCAGAATCCAAAGTGCAAAGATCTGATTCGTATTGTTAAGAACTGGAGTAATGCTGTGCCTTGGCGCAATGCATCATCAAAACCCAGCCATTATTTACTGTCACTTTTAGTCACAGCTGCTTATCAAGTGGTTAATGAGGGTAGTGAAACTGAAGCAATCAGAGCAGATAAGGATGTGTTCTTGGAACTGGCAGACATGGTTGGGGATGAGTCATTGGAAGTATTCTGGAATGAATATTACCTGGCTGATGAATATCCAAGGGAAAATTACCCAATTCCATTTACAACACCACTAGTTCAGGATCCTGCCATCCCCACACACAATGTTGCATCTGCTGGACTTGAAGACTGGGCCCAGTTCAGAAGAGAGCTGTCAAAATGGGTTGCAAAATTAACACTTTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10421 all species →	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan
PF00917 all species →	MATH	MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018952 all species →	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11258 all species →	2-5 OLIGOADENYLATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001730 all species →	Molecular Function	2'-5'-oligoadenylate synthetase activity	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060700 all species →	Biological Process	regulation of ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635353.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635353.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

53TPM > 0

2Conditions

12.4Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	28	2.48	8.44
all_coral_tissue · baseline	38	25	4.56	12.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.44
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.72
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.41
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.75
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.23
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.20
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.96
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.85
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.79
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.54
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.24
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.16
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.07
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.06
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.61
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.58
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.47
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.46
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.33
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.24
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.09
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.83
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.71
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.49
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.39
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.30
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.21
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.04
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.43
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.02
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.87
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.76
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.51
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.04
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.17
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.15
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.05
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.94
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.90
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.52
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.34
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.29
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.21
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.18
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.50
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.32
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.03
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.89
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.15
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.76
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.57
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.74
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.06
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.