Gene detail

Detailed information of XP_074635365.1 in Acropora palmata

Genomic Location: NC_133891.1:21634680...21654404
NR annotation: XP_015770512.1, PREDICTED: uncharacterized protein LOC107348935 isoform X2 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635365.1

ATGTCTTCTGGTAATCGTGGAATCCTTAAAGTTTTTCGCCGAGCAGCAAGGAAGGCCAAGAATTTTCGTTTGTTCACTAAAAGGTCAAGTTTTGAAGGTTTCTTTGCATCCAAAGGAGCAGCATATGCTTTGCCTGATGGAGATTTTGCACGGCGTGCCACTAAACATGGAGGGGAGATGCAGCTTCACCTTCAAGCCATGGTCAACTTGCTGCGGGACGAAGATGTTCTCAGACTTGTTATCAGACTTGAAAGTCAATACCCAAACAGAATTCGTTACTTGACAATTGTATCGGCCTTTGGCCCTGATGAAGAGGAACAAAGTATTGTCATGGGTGTGGACTGGATAGACAAAGCCACCATTGGACTTGTGGTCCCACTTTACAGAGACACAACTATCAAGCTTGATGGTGATGGTGGCTTCAAGATGACATCTGCAGATAAAACAAATATTTTCAAACCAATTTCTGTTCAAACTATGTGGACTGCCCTACAGTGGATTCACAAGTGCAATGACATTGCTAGAAAAAACAATTATTTCTACCCCAATGGTCCATCACATGCATGGGTTCAATATTACTACAGGAAAACTACATCAGACAGAATCTGCTTGAACGAATGGCATCAAATGGAAGATATTTTAATAGCCAAAAGACCTGAATCACCCGTTGGAACCAGTCCTGAAAAGGAACTAATCATGAAGCTTATTCGGCACAAAGTTAGAGAGATTATGACGAAAGTTGACCTTGAAGAAGTGACGTGTAGACAGGTGCGGACAATGCTAGAGGAGGACACACAAATGGAGCTAAAAGAGTATCGCTCATTTATTGACGAAGAAATGATCACCATTCTTGGTCAGATGGATTCTGCATCCCACATATTTGATCATGTTTACCTTGGTTCTGACTGGAATGCTTCTAATTTGGAAGAACTGAAGGAAAATCGAGTTGGTTATATTCTCAACATCACAAGAGAGGTGGACAACTTTTTTCCTGGAACCTTCTATTACTACAATATCAGAGTTTATGATCTGGAGGAAACTGAATTGCTTCATCATTGGGAAAACACCTACAAATTCATACAGAAAGCCAAAAATGCTGGTTCCAATGTTCTAGTTCACTGTAGAATGGGTATCAGCCGTTCCGCTTCAACGGTTATTGCGTACGGTATGAAGGAATATGGCTGGTCTTTGGGGGATACCATGAAACATGTCAAAGCTCGAAGAAGCATTGTTCAACCAAATCAAGGATTTTGGAAACAGCTTATAACATATGAGGGGATATTGAATTCCAGTAAACAGCGCTATAACAAGTTGTTTACAAATAGGCCTGAGCCAGGTGACCTAGAAAATACAGGGGAGGGAAAAAAGCTTGGAAACAATTCAAACGTAACAACAGAGCAACTGATTAGAGCTGAAGGCAAAGAGAATGTATACGAATTCCCAATCGAGACTACAGCGGACAAGACTGGCGAAGGAATTTCTACTCACTCGGGAGGTTCTCAGATGCTTACCGAAAATGATTTGGAAGCATTTGATTCTACCACTCCGTTACTTGAAGACATTGAAGGCGATTCTACAGAGGCAATGGCTTCTTCACTGGCAAATCCAAACCTTAAATCAAATTTGTTTCTCGGGGAGACAGAGTCTTCAAGTGAAACTGAAAAGACTTTGCTTCACCGAGTGCGTTCAGTGCCATCCTTATCACGAGAAGAAGCAAACAACCAAGAATCAAATATTGGAACAACTGGTGGCAATTTTAAAAGATCCAACTCCATGAGAGAGCGCGGAACAAAAAGCGAAGAACAACTCCGCCCAGTTATGGAACGAAAATCTGCTAGTGATGAGAATGTGACAGAGTTTGGTTGGGGTAAAAAAGGGGTCAATGAAACTGATGCACATAAAGATCTACAACAACAATTACATAGTGGTCTTGAAAGAGGGTTTGTAAAACGCGAATCGAAGAAGTTCGAAGCAGGAGTCTACAGTACATGTGCAACCGCTGTTCCGCTGACAGAGGACAGACCTGAGAGAGAAGCTGTCAAGGACGATAATGTGTGTGAAGGTACATTGAGCGAAAGCTCACTAGGTGAAGAACCAGAGCCTGGATTAGTAAAAAAGCATAAGGAGGAATATGAACTTAAACACAATGAGAGTCTAAAAAGAGGCGCTCTGCCTCAGCGAACTAATAGTGGTGAAAGAAGCAGCTTGAAACGTGAGAAATGTGAAATGCTGGCTGATTCTGTGTCCAGTAAAGCTGAGGAAACACCTGAAGGTGAACAAATTCCTCAACCTAACATTGACGTGTTAATGCAAAAGGTCAACGAGGACATGCAGAAGGAAGTATCAATTGCACGAATGTCAAAGAAGGGACTTGAGCTAGGAAAGAAACAAGCGGGACAACTGGTGCATCTAGAAAGCTTGGGTAGAGTTTCAACTGAAGTCCGCAGCGGAGGAGCCACGTGGTACGAGAAACTGACAAACGATCTGCTGTTGAGGGATCTGCAGTCAACACAGGTATCTGTTGAGTGCTCGGAAACGTCGATGGCCGAAAACGGAAATGAAGATTCAGTGAACGAAACTGGTAGTCAAAGGCAGGAAAGAGTTCAGCAAGATGATGTCTCAGGATCAAAAGAGCAAAGAGAGACATCAAACAAACATGATTATGAAAGCATTTCGCAGCGGGGCTTGGTTAAACGTCACACTCTTTTGATTGAAGAAAGGTTGCAGCCAATAGATCAAATGTCTCAGAAACAAGATGGTGGCAAAGGTGAAACAGAGAGCGGACAGAAAGTTGACTTTGAAGAGAATTTTGGACCAGTGGCAATCATAGGAGAGGCGAGGGATTCAACCACGAAATTCCTTGTTGAGGAAGACAAGAACTCTTTGTTAGAAGTGACTGTAAGAGATGGAGACACTGATGAATTGCCCAAACCTGCGGGAGACAGTGAGGAAAAAGTCATCCCTCAAAAAGGGTTGGTGAAACGCCACACGCTCCTGATCGAAGGAAAACTTAATCCTTTGGAACAATTAAACGATCCTGGAGATGAAGGAAACAAAGATAACGAAGCAAGACAAGAGTCTCATTTAGAAATAGTACTGGATATGACTGCTGAGGCAAAGGCGTCAGAAAAAGAGAGCATCACTGTAGAACGATATCACAGACAGGAACTATCTCAGGATAGGCAAGATAAAGGTAGCGAAGAGGACTATGAAAGCATGCTTCATAAGGGATTAGTAAAGCGACACACGTTGATGATTGAGGGAAAGCTGCAACCCCTACTGACTCAAGAAATAGCAGATGGAACGAAGGATGAACACTTGGTTCACGAAACAATTATTCAATCACATTTAGAGACAGAGTCAAGAGGGACAATTGAGGATTCAGAGCAGAAACAGTTGAGTGTTGGACAACTGGACACTTGCGACCGAGTAAAGAGAACTCTACAAATAGGGCATACGGGCGGTACAGAGGAAAGCGAGCGAGAAGCGATATGCGAACTGGATACAGACCTCCCAGCGCAGAAGGGTCTCGTGAAACGACATACTCTATTGATAGAAGGAAAACTGCCGTCATCAGATCCAGCCGCCAAAGAAGAAGAAGACAGCCAAGTAAAAGAAGGAGCTGTTAAGCAAGGAATATGTGGGTCTGTTAATCAACAGAGCTACCTCATTGAGCGGGAAAGCAAATTTAAATCCGAAGATAGAGAAGGAAATGGGAACGAACTCAGTGCATCGGGTTTGGTGAAGCGAGAGAAAATGCGTATTGAAGAAAGAGTTAATCCTACAGCGAGTGAAGTGCTATTAACCAGACAAGAAGTGGAAATGGAAACTGACAACTGTGACACTGGAACTGCCAACGGAGATTGTGAAACCTGTGGAGACGAAAAAGAAAACAACGACGATGATTCAATGGAAGATCTAGTGGAAGAAAAGGAGAAAGAGGAAGTTGGTGTGGACACTTCAAGTGTGGTGCGTGTGAAAGACCACACCCAACACCTGGAAGGCATCATTCGCGTAACGACAACTCCAAAGGATACAGAAAAACGGAACCAGCCAACATTCGAAGAGAACTTCCATGATTCAAACGCCGAGTCAACTAAAAATGCCTGTGTTCCGAGATCATGTTCAGACGATCAAATTGCGCAACGAACCGAAGCTACCTCATCGGAAGGTCTCCTTGAAGACATTTTGAGTGAAAGTGCCGTCAATATAGCGCTGATCAAAGCCCAGGAAAGTCTAGATTTGGAACACGAATCGTTTGTTGATTGGGATGTTGCAAACGTCAAGCAGAGAACTCGAGTTTTTGAAGAAATTGTGCGGCATTTTAATAATGATAATAACGATGAAGACCAGATTCGGCGATTCCAATCAATCCCAAGGACAGTTCATCCATCCGATAAACATTCTCTGCGTCGTCGATCCTTTTCGGACGTAACGGAAATAGTTTCGTCAAGCTCCGGTCGAGAGATCGGCTATACTATTCAGTTTAGTAATGGCGAATCCTCAACCTCTTCTTCACTTCCATCTGATTGGAAACCTCTTCGACATAGGCAGCAGAGTGAGGGCTGCAAAGAGCGAAAAACAACCAGGGCTTCATCGCCTGAAATGTACAAGGAAGGTGAACAAATTCACAAAAATACCGTGGAACTGATACATTTTGGCAATGTGGAACAAAATGATGCTTTTAATGTCAAGGAGAGGATTCAAATTCTTGACTCTAAGAATGGGAGAAACATCAGCAGCGTTAGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I79	Protein phosphatase Slingshot homolog 1 OS=Mus musculus OX=10090 GN=Ssh1 PE=1 SV=1
Q76I76	Protein phosphatase Slingshot homolog 2 OS=Homo sapiens OX=9606 GN=SSH2 PE=1 SV=1
Q5SW75	Protein phosphatase Slingshot homolog 2 OS=Mus musculus OX=10090 GN=Ssh2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR043587 all species →	Family	Protein phosphatase Slingshot-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864 all species →	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635365.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

76TPM > 0

2Conditions

36.0Max TPM

19.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	41	16.74	32.64
all_coral_tissue · baseline	38	35	22.94	36.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.64
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.21
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.59
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.57
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.33
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.45
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.77
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.66
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.28
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.04
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.92
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.72
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.59
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.21
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.51
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.56
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.37
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.28
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.86
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.71
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.05
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.53
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.44
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.94
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.80
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.40
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.02
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.69
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.50
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.38
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.10
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.88
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.21
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.03
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.68
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.68
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.50
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.46
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.16
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.10
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.27
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.04
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.69
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.48
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.09
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.31
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.99
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.61
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.49
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.41
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.76
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.55
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.92
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.79
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.75
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.58
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.70
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.58
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.70
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.15
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.82
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.82
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.65
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.79
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.49
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.08
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.51
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.41
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.03
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.39
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.39
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.27
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.97
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.53
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.74
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.22
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.