Gene detail

Detailed information of XP_074635479.1 in Acropora palmata

Genomic Location: NC_133891.1:18430228...18463021
NR annotation: XP_029194535.2, rho-associated protein kinase 2-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635479.1

ATGGATGAACGTCAAAGGCGAGAGAATCTCGAACGCAGCGTTCAGAATCCTCGCAACGAGCTTTATATAGAAGGGCTTTTGGACGGCATTCAGTCGTTGGTCAGTGACTGTGACTTTCCAGCCCTGAGAAGAAACAAGAATGTCGAAAACTTCCTTCAAAGATACGAAAAGCCGAGTAAAGTTATTGAGCAATGTCGTATGAACGCCAACGATTTCTATGTGATAAAAGTCATCGGTCGGGGTGCTTTTGGCGAAGTGCAGTTGGTAAGGCACAAAGTCTCGAAAGCCGTATACGCAATGAAACTGCTGAGTAAATTCGAGATGATCAAGCGATCTGATTCAGCATTCTTTTGGGAAGAACGTGAAATTATGGCACACACAACAAGTCCTTGGATTGTCAAGCTACACTTTGCTTTCCAAGATGCTAAAAATTTATACATGGTAATGGACTATATGGCAGGTGGTGATTTAGTAAATCTTATGAGCAATTATGACATTCCTGAGAAGTGGGCTAAGTTCTATGGAGCTGAAGTAGTGTTAGCATTGGATGCAATCCACAGCATGGGATTTATTCACAGGGACGTAAAACCAGACAACATGTTACTTGATAAACATGGTCACCTCAAGCTGGCTGATTTTGGGACATGCATGAGAATGGACAGGGATGGGATGGTGAGATCGGACACTGCGGTAGGGACACCTGATTACATATCCCCTGAGGTTCTGAAATCACAGGGAGGTGAAGGTTACTATGGTCGAGAGTGTGATTGGTGGAGTGTAGGCGTCTTCCTGTATGAATTGCTTATTGGTGACACACCGTTTTATGCTGACTCTTTAGTGGGAACATACGGAAAAATTATGGATCACAAAAATTCTCTACAGTTCCCGGATGACATTGAGATATCAAAGGATGCAAAGCATTTGATTTGCAGTTTTCTCACAGACAGAACCCAGAGAATTGGACAGAAAGGAATTGCAGAGATCCAGAAGCATAGATTTTTCATTAATGACCAATGGGACTGGAACAATATACGTGATGCTGTTCCACCTGTGGTACCGGAATTGTTGAGTGACGATGATGCCACTCATTTTGATGACATTCCTGAGCCCGACAGTGGAGAGGAGTTCTTTCCTATACCAAAGACATTTGCCGGCAATCATCTTCCCTTCATAGGATTCACCTACTCTGAGACTGTCAGGTGGAATGATATGCATAACAAAGCTTCTGATGGAATGGATGGAGGTCGTGGCAATGATAGTGGGCCAAAGCTGGAGGCTGCAAACCGCAAAATCAAAGAATTAGAAGAACAAGTTAGTTTGGAAATGCAAGCCAGAGATGAAGTGGAACATAATTACAAAACTATGAGCACCAAACTGGAAAAAGTCATGAAAGAACTGGACAGTGAGTTGGAACATAAAAGATCAGTTGAGTCAGCAAACAGAGAGCTCGAGAGGAAAGCAGCTCTCTTCAAGCATGACTTGAAAGAGGCCCAGCGACGCGGTGAATTTGAAACTGAAGCAAAAAGAAAGCTTGAAGGAAAAGTTCAAGAGCTTCAGAGCCGTCTTGATGCAGAATTGGATGCACGGGATAAAATCTCACAGACCTCACACAGTGTGCAGAATAAAATTAACCAGCTGGAGAAGCAGGTGTGGGATCTAACAGATGAGCTGAAAAAGGAAACAGATGCACATACCAAAGTCAGTAAGAGCCACAGTGATTTGCAAAAGTCTTATGCTGTGATGGAAAGATCTTACGGAGATCTCCAAGACAAGAACAGGATCCTAAGTGATCAGAAGCTTGGTCTTGAGAGAGAACTAATTAAAGTACAAGCAAGCCTGGAAGCTGAGATGAACATGCGAAACCAAGCCAATAATGCAAAGGCAGATGTTGAAAGTCAAAGTAGACGTTTAAAAGATGAGCTTGAACAGTTAAAAGCAAGGGCTGCCACAGACGCCAGACTACAGCAGAAACTGCAACAAGACCTCATTAATCTTGAAAAGGCAAAGGCTAATACAGAGTATGAGCTAAAGTCGATGAAGAGCAAATTTGAGAAGGTCACCAATGAATACCAGCAACAAATTACCAGTTTTCAAACAGAGAAGAATCGCCTGTCGCTGACTTTGGAAGAGAGAACCGAACAGGAGCGCGCCGAACAAACCAAGACTCTGGAAAGACTGGAACAAGAGCTGGAAATACGTGGAAAAGCTGAGGCAGCAGCAGCAGAAGCTGAAAGGCAACGGCAAGTTCTAGCTGTGGATCTCAAAGATATGCGTCAAAAGTATGAACGACTCCTGCAAGAGCACAACGCTCTCTCTGATGAGAATAAAGCGTTGAATTCCAGGCTCGACAGTGACAACCAAAAGAAAACGAACCTTGAAAGCGAATTGAAACTGACTGCTCAAGAAACGGCTGCACTGAGAGCGACAGAAAAGCAGCTTACTAAGCAAGTGGAAGAACTGCTGGACGAAAGAAAACAGTTGGAGGATGCATGTGCGAGACTCAAAAGCGCAAGCGCTGTGGATGATCTGCAGATGAAAGAACTTCAAGATCAACTGGAAGCAGAAACTTATTTTTCAACTCTCTACAAAACTCAAGTCAAAGAATTGAGGGAAGAGGTGGATGAAAAAGCTAAACAAATGATGGAATTGAGTACTGAAGTGAATCAGCTCAATGAAGATCGGGATTCTCTGTCAGCACAGCTGGAATTAACATTAACGAAGGCTCACTCGGAGCAACTCGCGAGATCGATTGCTGAAGAGCAATACTCCGATTTGGAAAAGGAAAAGACCATGATCGAATTGGAAGTGAAAGAGTTAATTGCACGGCACAAGAGCGACATGTCTGAGAAAGGCGCCCAGATAAACCAGCTAGAAGAATTGAATCAACAGTTGACAGCCTCGCTGGATCAGAAAATGGCCGACAAAGATGAACTCAATGCAAAATTCAAGAGTTTACAAGAAGAGCTCTCGAAAGCAAAGCACGCTAGCGAGGAAATCGATAAAGCGACCGAACAGCTGCAAAAGCAGCTTAAAATTGAGAAAGCGCTCAAAATCCAAGCGGTGAATAAACTGGCTGAGATCGTGAACAGGAAGGACTTTGTGCGAGAGAACAGCAAGAAACGAAAGGCCCCTTCCGATGACCTGAGGAAAAAGGAGAAAGAAAACAGGAAACTGCACCAGGAATTAGGAGCGGAGCGAGAAAAGTATGGTCAGATGGCTAGTCGATTCCAAAACCAGATAGCAGAATACCAAGTTAACCTTCAAACGGAAATTGAGCAGAGGCAAAAAATGCAGATGGAACTGGATTCTAAAAACCTGATGATCGACCGACTTAACTCACAGATGAAGCAATCCTCTTTGAACACTAGTATCAATGATGATGATGCCCCATCGGTTTCGGTGCACTTGCCCAAAGAAGGCTGGGTGTCCATTCCCAACAAGCAGAACATCAAAAGATATGGTTGGAAGAGACAGTATTTAGTTGTAAGCAGTCGAAAGATTTTCTTCTATAATTCTGATATGGATCATAAAAGTAGTACCACACCTTCCATCATTTTAGAAATAAGTAAGTTATTCCACGTAAGGTCTGTGACCCAGGGTGATGTCATACGTGCTGATGCGAAAGATATTCCTAGAATATTCCAGATTTTATACGCTAATGAGGCCGAACGGATCAATCCTGTTGAAAAAGAGAAAGAGGAACAGCAGCCCGAGGATCGAATGAACGCGATTGACTACATGAGGCATCAGTTTATTCCAATGCATTACCACATGCCAACCAACTGCGACTCGTGTAACAAGCCCCTGTGGCACATGTTCAAGCCTCCCCCAGCTGTCGAATGCAAGCGTTGTCACATGAAATGTCACAAGGATCATGTTGACAGAGAAGAAGCTTGCATCACAATGTGTAACGTGAATATGGAGATGATCTCAGCCAAAGAACTGCTGGTTCTAGCGCAAACTGCTGATGAACAAAAGCAGTGGGTGGTGTACCTCAGCAAGAAAATTATACGAAAAGAGCCCAAAATAAAGAGCCCCTCTGTCAGGCTGAGTGTCGAAGAAGCAAACGCCCGACGAAACATGGCGGAAAGATCTGGGGGACGCCCAAGCGGCCCCCAGCGATCGGTTTCCATGTCAGTGGGACAAAATAGGAAGATTACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75116	Rho-associated protein kinase 2 OS=Homo sapiens OX=9606 GN=ROCK2 PE=1 SV=4
Q62868	Rho-associated protein kinase 2 OS=Rattus norvegicus OX=10116 GN=Rock2 PE=1 SV=2
P70335	Rho-associated protein kinase 1 OS=Mus musculus OX=10090 GN=Rock1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002895 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF08912 all species →	Rho_Binding	Rho Binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015008 all species →	Domain	ROCK, Rho binding domain	Interproscan
IPR050839 all species →	Family	Rho-associated Serine/Threonine Kinase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22988 all species →	MYOTONIC DYSTROPHY S/T KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0031032 all species →	Biological Process	actomyosin structure organization	Interproscan
GO:0048598 all species →	Biological Process	embryonic morphogenesis	Interproscan
GO:0072518 all species →	Molecular Function	Rho-dependent protein serine/threonine kinase activity	Interproscan
GO:1901888 all species →	Biological Process	regulation of cell junction assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635479.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635479.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

0TPM > 0

2Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	0	0.00	0.00
all_coral_tissue · baseline	38	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.