Gene detail

Detailed information of XP_074635589.1 in Acropora palmata

Genomic Location: NC_133891.1:18980539...18996851
NR annotation: XP_044174128.1, LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635589.1

ATGGTAAAGGATCTGCGCAATTATTTGGCACCAGAGATGAGAAAAAGCAGCGAATCCCCAAGAAACTTTAAATTGCTTCATCAGACGCTCTGCATAACATCAATCGACTTCAAGCGAAAATGTTTATTCGGTTATGTAGAATTAAAAATCCTCCCTCTGACAACCAACCTTACCAGGTTGAAACTGAACTACAAACAGTGCAGAATAATGCGTGTTTGTATTCGTGATGAAAGGAGATCAGGAGAACATGACTGGTATGATGCAGGGTTTCAATTGGATGATCCAGGCAGAGTCATTTGCTCCGATAACAAAAAAAGGAATCTGGATTACTTCTTAAGTTGTTTACAGAGTGCGGTAAATTCTGTTGATCCTGAGACAGGTGGAGGGGAACTGGTAATCAGGATCCCTAAGGAAGTTTCAGCATGTGCAAACGGTCGCCAATTCCGTGTCAGCATTGAGTTTTCTCTTGAACATCCAGAGGGGGGAATTCAGTTTGTTGTACCTAAAAGAGAAGGAACCATGGCTCAGCGGTCAGCACATTTGTTCAGTTATGGAAGTGCCAATTCCTCAAGGTTGTGGTTTCCTTGTGTTGATTCATACTCTGAGTTGTGCACTTGGAGCATTGATGTGACAGTTGACAAAGACATGGTGGCAGTTAGCTGTGGAGATCTCATCGAAATGATTTTGACAGCTGACGAAAAGAGAAAAACATATCATTATACTTTGAGTATTCCCACCTCTGCTCCTAATATTGCCTTGGCAGTAGGGCCATTTGAGATCTATGTTGACCCTGTTATGCCAGAAGTCACTCATTTTTGTTTGCCTGGCCTTCTTCCTGTCCTAAAAAATACAACATCATTTCTTCACGAGGCATTTGAATTCTATGAGGAGTACCTGTGCTGTCGTTATCCATATGCGCATTACAAGCAAGTGTTTGTGGATCAAGCCTATGATATTTTGTCACCATATTCATCCATGACTATTTTTAATACAAGTCTCCTACACTCCTCAAGGATCATCGATCAAGGATTTCAAACAAGAAAATTTCTTTCACAAGCCTTAGCAGAACAGTTTTTTGGGAGTTATCTCTGTATCCAGACATGGTCAGATTTATGGCTTGCAAGAGGAATATCAGGATATTTGTTTGGTTTATTCATGAAAAAGATGTTTGGCAACAATGAATACAGACACTGGATAAGCTTGGAGTCCAAAGAGGTATGCAGTTATGAGATGCAAGGTCCTGGAATTCCTGCATTGCACAATGCAGGGTCACTCTCTGGAACAAGTACCTCAGCAACCTCCTCAGGTCAAGCACCAGAGTCCCCTACTCAGGGGGGCCTTATCTTGCACCCTCACTTGACATCAGGAAGAAACTTGGAGATCATGTGGAGCAAGTCACATCTGGTTATGAGAATGATTGAGATGAGAATTGGACAGGAGCCTCTGCTGCAAGTATTCAACAAGTTGTTGTCACTTGCTAACAGTGCAGCACAGCCAAAAGCTGATTACAGCCTTTGGACAAACCTACTACTGTCAACCAGTGGGTTTCTCAAGTCAATATCAACAGTTTCTGGCAAAGACATCAATGTTTTTGTGGATCAGTGGATTTGTCATAGTGGAGTTGCAAAATTCCACGGCAGCTTTATTTTCAATAGGAAGCGTAACATTGTTGAGCTTGAAATCAAGCAGGATATGTCTAGAGGAACAGCCAAATATGTTGGTCCTCTTACAGTCTGTATTCAAGAGCTGGATGGATCATTTAATCACACTGTGCAAATTGAAGATGCATTCAGTCGTCATGAACTTCCATGCCACTCCAAAAGTCGAAGGAACAAGAAAAAGAAAATCCCACTCATGACAGGAGAAGAAGTTGACATGAATCTCGATGCGATGGACTCTGATTCGCCGGTGTTGTGGGTTCGCATTGATCCCGAGGTCACGTGGCTGCGTCATGTGACATTTGAACAGCCTGACTACATGTGGCAGTACCAGCTTAGGCACGAGAGAGATGTCATCGCACAGACTGAGGCCATCCAAGCCTTGGAAAAATTTCCCACACCGGCGACCAGACAGGCTCTTATTGACATGATCAACCACAGTGAATGTTTTTACAAAGTCAGGTTGGAGGCTTGTCACTGCCTTGCCAAGGTAGCCACTGCTTGTGCATCGAGTTGGACTGGTCATACATCAATGATTGGAATTTTCAGGGACATGTTTGGATCACAGTCGTGTCCGCATATCGTAAAATACAACGATTTCTCTAACTTCATTGCGTATTTTGTACAAAAGACGTTGCCTGTAGCTATTGCCTCTGTGAGGAATGTTCATTCCCAATGCCCGCGGGAAGTTCTTCAATTTATCTTGGATTTAATCAAATATAACGACAACCGGCTTAACAAGTTCACGGATAGCCATTACCGAAGTTCTCTCATCGATGCCCTGGCCAACACTGTCACTCCCGGGGTATCCGTGGTAACCACAAACAGTGAAGGCAAAACAGTGGTGAAACTAACAGAAGAAACGCAGCTCATCTTGAAAGAAGTTACGCGACAGCTGAATTTGGAGAAATTGCTTCCAACTTACAGATATGTAGTTTCTGTTAGTTGTTTAAAAGCGCTCAGAGTATTGCAAGTGAATGGTCACGTGCCTCCTGATCCTGCAGCCTTTGAATATTACGCCAGCGATGGCCATTTTGAAGACGTTCGTCTAGCATCAATTGACTGTCTCGTGGATCTCACAAAAACTGAAAGTCTTGAGAGAGGACTCCACTACTTAATTGGCCTGATTGAAAAAGATCCAGTGCCTTTCATAAGGCACTATGCGCTGTGTGCGATGGCGAAGAATCCTCCATTCTTAAAGAAGTCCGAGTGTCGCCTGAATAATCTGGATTTGGTCGAACGTTTGTGGCGATTGATTAACTGCAGTTGCTCAGTGGACGCTCGGCTCAGGCAGGACGGTGTGGAGTTGTACAATGCGTTATGGGGCCGACTTACTCCAGGCTGTGTTCCTCCGCAAGGGATGGGTATTGTGATAGATTTGAAGGAGCGGAAGATCATGAGCTTGTCTCCCCTCCCACCACCGGCCTCCCCGGGATCTGTGAGCGGCGAAGAATCGACAACATCAAGAAAAAGCCACAAGCGAAAGGCATCTCGAGCAGCGTCACCCCCAGATTTAAGCCACTTGGATTCTCAACCCGACACACCGATGAGTATTGAGTCTGCAAATTCAGATGCGAGCAAACTCCGCGTCAAAATTAAGATTGCAGGTGAAGAAAGTGGCGCAGAAAGTGGAGGCGAAATGCGTATGAAAACTGATCCCGACGGAAGCAAGTCCGAACACAAAAAGCACAAAAAGAAGAAAAAGAAAAACAAACACAAGGATGACCGAGAGAAGAGGAAACTAAGCACTAGTAGTAGTAATTATGATTCTCCTCTCATGTTCGACACCAGTCTAGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PW3	Transcription initiation factor TFIID subunit 2 OS=Danio rerio OX=7955 GN=taf2 PE=2 SV=2
Q5ZIT8	Transcription initiation factor TFIID subunit 2 OS=Gallus gallus OX=9031 GN=TAF2 PE=2 SV=1
Q6P1X5	Transcription initiation factor TFIID subunit 2 OS=Homo sapiens OX=9606 GN=TAF2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002730 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan
PF17900 all species →	Peptidase_M1_N	Peptidase M1 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR037813 all species →	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR045357 all species →	Domain	Aminopeptidase N-like , N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03128	TAF2; transcription initiation factor TFIID subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.