Gene detail

Detailed information of XP_074635594.1 in Acropora palmata

Genomic Location: NC_133891.1:19257644...19262525
NR annotation: XP_029198239.2, probable RNA-dependent RNA polymerase SHL2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635594.1

ATGTTTCAGAATGACATTAATAATGGAGAAACAACCAGTCGTTTGCAACTTGCGTCTGCTGTTGATACGGGGAAATTAGGGCTATTGAAAGCGCTGGGCGCAAGCATTGAAGTTTTCGTAGAAGTCACTCTCCATAGTGAAAAGAGCGACCATCAAAATTTTCATCCCTTTGCCGCATTCTGCAATAACGATCAGGGAACAACAAAGATTTTCTTTTTCTCTCCCGTCAATACGATACCAGGAGAAAAGATGGGAATTCCCTTCTTTGTCTCCTTTCCAGATGAAGGAACAACCCCCGCAGAGCCTCAAGATGACGGAAGACAAAAGCCAGTTTACGTGAAGCATGTAGTTATTAAAGACACTGACTTGTTTTTACAACGCCTCTTGAGTTCGACAGGCAACTCGACAGTGCTTCAACAACTGACGGTCGTTCAATTTCTATCCAACGACAAAAACTTCATCGCCGAGGTCTTGAATACGGGGATCGAATGCAATGGATCACAGTATCATTATTTAGGGCAGTCCTCTTCGCAGTTACGAAGTAAAACATGTTTTATGATTGACGCTACCAGAAATGACATCTACCAAGTGTTGAAAGAGTTCGGAAATTTCTATGAGATCTTTCCGTTAGCCAGACGAACCCAAACAATTGGTCGTATCTTTACACCTTTTTCCTACAACTTGAATCTCAAAGATGACGACTTTGACGTCATCGATGACATCACAAGCGCTCTGGGTGCATATGTTTTTACCGATGGGTGCGACTTCATGTCCCCAGAGCTTTCCTACGAAGTTCAAAAGTTGTACAATCTGTCGTATTCACCTAGCGTTATCGAAATTAGATTCAAGAATTTCAGTGGTGTTCTTGTGCGTTTTAACGAGATGCCAAACATGAGGAAAAAGGCGCTTTTTCGAAAATCTATGGCTGATTTTCGCTTTTGTCTTGAGGAAATGAGCGAGGGTAACGTCCTTGGAGTCGTAAATTATTCGCAGCCACATTCCCTTGGTTATTTAGACATTCTGACAGTGATGTTGCTAACCGAAAAAGGTGTCCCGAAGGAACATTTCGAGAAAATGCAGGCAGATTATCATCAACTAATCCGGAATCTAGAGGACAGAACGTTCGCGAGTTACTTCCTACGAACAACTGGGAATGAAGATTTGTTGAAGGCGTTGAAAACAGACGGATTGAGCCAAAGAATGTTGAAGGAGTTACATGACCTAAAAATTAAAGAAACGAAAAACATGAAAGCGGGAAAATGCCCCGATGACAACGAGGAAAAGGAAGGAAAATATCAAAGAGAATGGAGGAAAACGAACGAAGAAGCTGGTGAAGAGAACGATAGACAACCACAGACAAACAGCAGCGAAGATTCCTGCTCAAAAAGTATCCTTGAAGATCCTTACGTAGATCAAGACTTTCGAATATTCACACCTGATGCTAGAGTAGTTTACGGTGTCTGCGATCCTTATGGCCAGTTGAACTACGGGGAATGTGTTTTTCAGCCTACGCTTCACAGACCTGAATCGGATACTTTCGCTTTAGCTGAGAATGTGGTGGTTATTCGTCGGCCTTCTTTTGATGTGCAAGATGTCATTGTCTTAAAATTGGCTCACGGTAAAGAAGCCTATAAAGATTTACATGATTGTATTGTTTTTCCATCAAAAGGAATAAGACCGCATGCTTTTGAATGCGCTGGGGGACGGGTGGGCGGTGACAAGTATTTTGTATCTTGGGATCCTGGTCTGATCCCTCAATTTGTCAGTAGTCCATATGTGAGCTTCGCAGAAACAACAACTTCCAAGCTCGTGAACAAAACAAAGGAGCTTCTTATGAACTTGAAATGTTTCAAGGAGAAGAAGCCTGCTAGTGAAGGCGAACAAAGTAAGCACTTGCAGAAAGCACACATGGAGATCATCGAACATTTTGCGAATTTTGAAGACCAGGAGAACCTTCGCAAACGCGCAAGGAATTTGTTTCTTAACTACGCCTCTTTGTTCGGTTCCACATGTCCGGAATGCGAACTTCTCAAAAAAATGATCGAGCAAGAATTCGACTGCAATTTGAAAAGCGAACTAATTAGCAAGAAACTCGTGGACTTGGAAGGAAAATATAATAAGGAATTACAGAGATTCGCCAAATTATCCCACACTCGTCCATTGTCCTCGCAGCCATTAAGGCCCCTTGGGATGTGGGATAAACTTTTAATTTCACTTCATTGGAGAAAGCCTGCATTTTGCCCCGGAGATGACATCTGGAATAGTATAAAGAAAAAAAATGTTGAGTTTGTGACATCTGAAAATATGGTATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635594.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.