Gene detail

Detailed information of XP_074635682.1 in Acropora palmata

Genomic Location: NC_133891.1:5275282...5282051
NR annotation: XP_029192719.2, T-box transcription factor TBX3-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O73718	T-box transcription factor TBX3 (Fragment) OS=Gallus gallus OX=9031 GN=TBX3 PE=2 SV=1
Q9IBC8	T-box transcription factor TBX2-A OS=Xenopus laevis OX=8355 GN=tbx2-a PE=2 SV=1
Q3SA48	T-box transcription factor TBX2 OS=Xenopus tropicalis OX=8364 GN=tbx2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000393 (this species only)
Transcription factor family	T-box · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR018186 all species →	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan
IPR002070 all species →	Family	Transcription factor, Brachyury	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635682.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.