Gene detail

Detailed information of XP_074635812.1 in Acropora palmata

Genomic Location: NC_133891.1:561662...575038
NR annotation: XP_015754911.1, PREDICTED: rab GTPase-binding effector protein 1-like [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635812.1

ATGAAATACCAAGAGGAAGTGGCTTCATTACAACATATAATGTCTGAGGCTGTTCGGGATGCCCAACAAGGTGCTGCGGAGCAATTTGAAATAGAAAAGCACAACCTCATGGCTCAAAATAAAAAACTGGAAAATGAAGTGAGAAATTTAAAGTCCATTCTTTCCTCTGATGGAAATGGCAGTGTTAAGCCAAGAATGTTGTCTGGATTGTCTGATGCTGTAGTTGGTGCCATAAAGAGGAACACAACACATAATTCACCTGTTAGTGATGAAGAAGCTGTCAGTATAGGTTCAAAATCACTGGAGAAAAGCATGGAAAAGGCTCAAGAAGATGCAAAGGTGTTACGATCAATTGTTTTGCCACTAGAGGAGGAAATAATATCTTTGAAAACAAAACTGCAAGATTCACAAGACAAGCTACAAACAGCAGAAGCCAAAATTAAGGAGGCTGAAAGCAAAAATCATGAAATTAATTTTCAAAATGAGGAGTCATTATCCAAGGAGAAATTTGATGAGATGCAAGAGAAGATAAAGGAATTAAATCAATACCTAGATGCAGAACGATCTTCGAGGACAGATTTAGAGATGTATGTTGCTGTTCTTAACACTCAAAAAGGTGTTTTACAAGAGGACACAGATAAACTTAGAAAGGAACTGCATGATGTTTGCAGGCTGCTAGAGCAGGAGAAGGCAGCACACAGTGATTTAAAAAACACTTGGGAAATGGCCAACTTGCAATTTGTGGAAAACCTAAGAGTCCAGAGGGAAGCATATACCAAAGTATGGAACATTCTTACAACTGAACAAAGAATCATAGCACAGGAACAGCAACAAGATGAATCACAGGTTGGCAAACTCATTGATCTTCAGAGTCCACAGACTTCACCACAACCAACAGTCCAACAGCCAAGTTTGACTCACCCTCCAGCCATGGTGATCTCGTCTGGATCCTCATGGGATAACATTCCTACAGTACCATGCACAAACCAATTAATAGGAGGACCAGACAGTGTTACTGCTCCTATTCAGGATGATAAAGGAGCTGGCTTTAAGAGATCTCACTCAGCTTCTGATACAACAATTGAGGAAGAGACTAACAGTGGTGAAGTATCAAGAACACGATCTGTTGAGGAGATACTTAGTACTACACCTAAGCATGAGGAACCCATCTCACTGCCCAAACCCAGGTTACCCGGTAGTTCCAGCAAAGGGCTCAATAGCAATGTGGACTGGAAAGTGTTCCAAGAAGCTGTGAAAGTTTCCCATAAAAGTGATTTGAGCAGATCATGTGCAATGTGTGTGAATTATGAGCGACAGCTGCAAAAGATGCAAGAGGATAATCAGAAGTTCCAAAATTTGGCCTCCAACTTTAAGGTGGCACTAGATCAAGAAAAGAAAGAACTTTTCAAAGAACAGAAGATGAGAAGCAAGTTGGAGGAAAGTGTAGCTCGTGCAGCAGAAGATGCACAGATGCAAATCAATTCTTATAAAATGACTAATGACAAGTTGGAAAAGTTAATGACTGGCCTGTGGGAGAACTTTGAGGCAACTAAACATGGGGCAAAAATGCATATTGAAAAACTTGTCAGCTCAAGGGATCAGCTTAGTCAAAAGTTGAATGCGCTGAAAAGCAAATACACTGCTCTCCAAGATAATGCCATACAACAACTTACTTACATGGACTCTGATGCCAGATTAGCAGAGATGCAAGGGCAGCTAAGGGAAATTAGGGCTGCTTCAGAAAACACAGAAGAAAAGTTAAGAAGCGAGGTGACTTTCCTCAAGGACCGGGTTATCGCAGAACAGGTTGCCAAGGATAGTTTAGAAGCAATGTTACAGGGAGATGTAGACAACATGAGATCTGAACGTGACAAATTAAAAGAAGAGCTAGTAAAAGAGCGAAGTGCTAAAGAAGTGTCAAAGGTGGTAGAAGAAAACAGACGTTTAAAGAACCAATTGCAGTCAATGACAGAACAGCTAAACCAAAGTGAGACTGTGCAAAGGGATTTTGTTCAACTGTCTCAGTCATTGCAGATGCAAATTGCTCAGATTCATGAATCAGAAACAGATGTGCGATGGCAATACCCTGAGGATATTACAGAGTGTCCGAACTGCAACAGAGGCCTAAAATCAAGTAGAGAAAAGCGCAACTGTCATCACTGTGGGAAAGTATTTTGTGAAAATTGTACAACCAAATCAGTGCTTGGAAACAACTCAAACAGACCACATCCTGTGTGCGACAACTGTTTTGCTATATTAAGCAAAGACTCTAAATCTACCTTTTATAATACATCACTAGCAGATGATCAGAGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35550	Rab GTPase-binding effector protein 1 OS=Rattus norvegicus OX=10116 GN=Rabep1 PE=1 SV=1
Q15276	Rab GTPase-binding effector protein 1 OS=Homo sapiens OX=9606 GN=RABEP1 PE=1 SV=2
O35551	Rab GTPase-binding effector protein 1 OS=Mus musculus OX=10090 GN=Rabep1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03528 all species →	Rabaptin	Rabaptin	Coiled-coil	Interproscan
PF09311 all species →	Rab5-bind	Rabaptin-like protein	Coiled-coil	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR003914 all species →	Family	Rabaptin	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR018514 all species →	Domain	Rabaptin coiled-coil domain	Interproscan
IPR015390 all species →	Domain	Rabaptin, GTPase-Rab5 binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31179 all species →	RAB GTPASE-BINDING EFFECTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12480	RABEP1; Rab GTPase-binding effector protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.