Gene detail

Detailed information of XP_074635840.1 in Acropora palmata

Genomic Location: NC_133891.1:5413924...5427429
NR annotation: XP_029193006.2, bicaudal D-related protein homolog [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635840.1

ATGTGCGACTGCCTATTGATGCGAGGAAATTATGGCGGTCGATTGGAGGCAAAGCAAATGAAGGTCCCTACGCGTGCTGTTTATACTTTGGCCATGAACGACTATGACATCGGAGATGAGAATTTTCACAGTCAACACGATCTCGAGGGAGACGGCTGTGATTATGGGCGAGAATTCTGCAACGGAATCAACGACGAAGGGCCAAGTTTAGCGGATGATGGACAACAACTTGAAGGCGATGATGACAGTGACATCTATCGACAACTAGCACAGAAAGAGAAAGATCTTTTATTGGCAGCAGAGCTTGGTAAAGCTCTACTTGAAAAAAACGAAGAACTAAGCCGGAACTATGAGCTTTTACAAGAAGAGTACTCCACAGTTTTAGAGGAATTGGAACAGCACAAATATGAGCTGAAATTAAAGGTAGAACGCTTGCAGGAGGGCAACGATTCTCGAGTTGTCGAACTCCAAGCGGATTTGATAGCGTTAAGTAATGAATTGAAAACATTACGGTCAAACTCGGAAACCGACAACCTAAGTAAACGAGAAACAGTAGCTGGGCTTACGGAAGAGAACGAACAACTTCACTCCGAAATACAAAAGGTTAAAGCTGATAATGAACAACTTAGAAGAGATCAAAGTCTCCTAACGAAGCAACTTAGTAGGAAAATTAGCATTGATGATGACAGATTACAACAAGTGGAAATTGATGAGCTTTGGGAAAAGCTCACCAGACTGGAGCAAGAAAAGCTAAGCTTTACACAAACAATTTCTGAGCTTGAAGCAAGCAAGGAATCCCTATCAAAAGAAGTAGAAGAGCTCACAGCGAAAAATCAGTCATTGGAGAAAAAATTAACATCAAGCAAGGGCCAGCTTGCTCATTGTGAAGAAGAGCTCAACGAATCTAAAGATCTCAATATGTTCCTTCAGGATCAGATTGATGAAATCAAGATGCAGGCGTCGATGGACCAGCTGTCGAGAACGTCATTGTTTTCTGAAATTTCTGACCTGTCTGCAACTGGAGTGGATGACGTCGACGAGCCATACAAGAAGCTCGACGCGGTTCCAACGAAATTGATTGGTACAGTTGCTAGTCTACATGGCTCTCCCAAACCGTTGCAAGCTTCGTCGTCGTTAGGCCTGGGGGGTTTGGGACTGCAGAATTCCAACAAACGTCAGAGACCATACAGTAGTATCAGCGATGAAGATTCTGATGACAGTGATCTGGAATACGACCAAGATGAACAAGATGGCGAAGTTGGACTTGTGGAGAGAAATAGGGATTTCTACGCCCAGCTAGAACAAGAGGAAAAGGTTAACACTCAGCTAAAAAAGGAGGTCACGGAGGCTCACAAAGAATTACGCGCTCTCTACGAAGAACTCCGAGGCTCTCACGAAAGTCTGGACACAGTTGACGTTGAAGAATTAAACCCAAACTCGGATTTTAAGCCGGGTTGCCTTACTACTTTTGTGAAGAATTTCAAAGATGTGTTAGAAGAGTTCATAAGCGACAACAGCACTAGAGCCACGACTCTGAAACAACAATTATGCAAGGCACATGAAGCAGTAGAGGGTATGGAGGGTGAACTAAAAGAAATGAACTCCGAGACTAAAGTAAGGGAGGAAGAAATTCAGGCTTTAAAAGAGAAGCTTTGTGAAAAAGACGAAGAGATAAAACAAGTAAAAGAACAAAGAAATCTTTTAGCTAAAGGGGAATGTGAATCACAATTGGCTTTTGATATCATGTACAACGAAGCTGTGCAGGAAAGGAAAGACGCCATAGAGAGAGAAAAAAGGACAGCGAAAGAGTTAATGAAGACTAAAGAAGACACAGAAGAGCTTGAACACCAACTGAAGGAAGCAATTCATCAAAAGCTGCTTCTCTCGGAACAACTCGACGACTGGCAGTTTGACATGGCTTCCTTGATAGACGATCAAGTTCAGAGACAGATGAAATCAACGGCCAAAGAACAAGACGATAATACAAGAAAGAGAAGAGTATCGGCTTTCACTCGACCCACGCGATGGAACTGGACAAACAGCAGCAACAGAAGACAAAGCCAGCATTTGTCGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8SWR2	Bicaudal D-related protein homolog OS=Drosophila melanogaster OX=7227 GN=BicDR PE=1 SV=1
P0CF95	BICD family-like cargo adapter 1 OS=Danio rerio OX=7955 GN=bicdl1 PE=2 SV=1
Q8CHW5	BICD family-like cargo adapter 2 OS=Mus musculus OX=10090 GN=Bicdl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001390 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04849 all species →	HAP1_N	HAP1 N-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006933 all species →	Domain	HAP1, N-terminal	Interproscan
IPR051149 all species →	Family	Spindly/BICDR Dynein Motor Adapter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32123 all species →	BICD FAMILY-LIKE CARGO ADAPTER	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_074635840.1 in Acropora palmata.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074635840.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635840.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

76TPM > 0

2Conditions

391.3Max TPM

53.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	41	77.26	391.28
all_coral_tissue · baseline	38	35	24.61	52.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	391.28
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	291.92
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	275.86
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	232.85
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	147.75
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	119.46
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	117.05
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	98.67
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	97.16
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	96.95
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.23
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	88.28
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	87.36
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	78.31
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	75.04
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.45
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	73.18
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	73.08
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.66
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.05
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	64.29
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.41
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.19
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.37
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.14
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.60
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.42
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.83
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.11
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.87
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.51
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.58
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.10
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.05
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.49
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.44
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.08
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.49
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.62
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.83
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.83
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.77
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.08
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.07
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.42
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.67
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.27
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.62
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.80
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.48
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.93
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.59
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.42
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.15
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.87
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.23
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.96
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.83
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.78
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.88
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.84
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.53
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.88
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.87
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.59
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.89
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.07
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.23
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.94
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.79
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.02
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.43
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.78
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.92
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.34
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.10
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.