Gene detail

Detailed information of XP_074635850.1 in Acropora palmata

Genomic Location: NC_133891.1:15371378...15393158
NR annotation: XP_029190770.2, uncharacterized protein LOC114957474 isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074635850.1

ATGAGACAGTCACCTACAAACGAGAAAAGTGCTGTTACGGAGGTGAAAGTGGTTGATGTTGAGAAACGCAGAGCAAAAGATTCCTCTGGGAAAAACTATGAATATGAATTGAAAGTGAAATGGTCGGACGAAAGCCAATATAACATATTTCGACGCTACAGCATGTTCTTTGACTTGAGGGCTGGTTTAAAGAATCTCTTTCAAGATAAGCAACATTTTGGTATTACTGTTCCAGAATTGCCTGTTACTAGATTTGCTGGTGGAATGCTTTTTGGAGCTTTTTCAAAGAAACAGTGTAAAAATGTTGAAGAGTTTTGCCAGAAAGTCATCCAACTGCCTTCAGTTGCGTCTCAGTCTGAAATTGTTCTGGCGTTCTTCAGTCGATGGGCAACAGATGGAATTTCCCGAAATGATAATGACAAAGGAAAGTTGGCCTCCCCTGCAAGAAACGATGAGCAGATTGTGGAAAGGTACCAGTCAGTTGCAGCATTCACTGGCAGTGGCAGAGGAGAAATGAGTTTGAAAGAAAATGAATTGGTGACAGTTATTGAAAAGAACAACACAGGATGGTGGCTTGTAGCAAATTCCAGAGGGGACCATGGCTTTGCCCCGGCAACATTTCTTGAGCCAATAGATACTGTCCATGGACAAGAGGAGGAAGAATGGAGAGACATTGACGATGATGATTGTCACTGGATAACAATCGCACCATACACAGCCAAGAGTGATGACGAACTGAGCTACAGGGCAGGTGAAGAAGTTGAAGTTCTTGCCACCAGTAATTTTGGCTGGTGGAAAATTAGATTGAGGGGTGAAGTTGGCCTCACACCTGGATCAAACCTGACGCCGAAATCAAGACACGACAGCATGGATCCGTTCATGACAGACGAACAGCGAAGAAAGGTTAATGGCAGCTTCACGTACAATACAATGCAACGATTTTTACATTCCACGATGCAACAAGACAACTGGCTACAGCTTCTCCTTCAAGAAGAGCATCCTGAAGGTTGCTCAGATGAACCGCACGAAAAAAGTGACTCGAATCATTTGCAAAATGGCATGCAACCACATGACCTTGATCCCCCAATGAGCTCTACGTATTCCAGCATATATGCAAGCATAAGGGCGCCGCCCCCGAGAAGAGATTCAGGTAAAACGTCGAAGCCTGCAGTCAACAATGAAGATATTCCCAAGCCAAAAGTGTTGCGATCGCAGTCCACGCCTCATGTATTAGAATATGCTACTGTGGATATTAGCTCACCATCTGCGAGGAAGAGAACTCCCGAGAGTAATACAGAAAATACCAGAGAAAGCATTCCTCAATATGCCTCTGTTATTCCCAAACACTTGAGAGCTAAACCCAGACCCCGCAGCTTCAGTGAAGACATCGCGGAAGAAGTGAGCCTGCCGGCGCACAGTCCATCTCCTGAGCTCCCGCCACCTCCCCCATCAGTGCTGTTAAGCAATTTTGAAGAAGAAAATGATCCAAGTTACGCAACAGTAAGGGAATACAATGCATCGTCAAACAGCTCGTCGCCAAGAGTGCTGCGTACTCCCGATGGCGACGTTCGCTACGGAAGTCGAAAGTATCACAATTTTCTTCGAGTGGAGAATCAAACAAATACACCCGGCGAGCATTTTGTAGCCATAACAAATTATTCCCCAACCCCTGATCGACATGATGACATGCCGCTTGCCGCTGGTGAAACTGTGCGCTTGCTCACAGAGGACGGCCCGTGGGCTTTTGTGTCAGCAGTGGATGCCACCAGGAGGAGAGGCTGGGTTCCCGCATCAATACTAAAAAAGGGCGGAGGGCTGCAGTCCTCTTATTCAAGGCGATCCATGTCGGTTGGCGACATCTATAATGCGTGTCTGCAGGACGAAGTTGCTATGCAACCAAAGAAATTATTAGTATCATCACAGTTTCCCAAGCGACCCATACCCACTCCCCGCTCTGATCTGGAAAAACCATCGGAGGACCCAATGGGAGCTCCAGCAGAAATGGCCCCGCCATTACCTGGTGGCTCCAAACAAAACCGCAAGCCTGGAAAAATCAATGCTCATTACTTTTCAAGGGAAGACTTTACAACGAACAACAGCAAATGCATTAGTATTCGAAAAGGTGAAGTTGCTCAGTTATTGGAGGTGCAACCCTCTGGCTGGTGGAAGATGAATGTTGAGGGCGTGGTCGGATGGACACCTGGCGACTTCTGGGATATTTTGCAGGATGATGATGAGGAGGATGATTTTGCCAATAACAATCAGAAAGATAGATCAAGACATAGTTCGTTTGGTGACGAGTTATGGTATTATGGTAAAATGTCGCGTCAAAAATGTGAAGAACTGATGATGAGGGGTGCCAAAGAACTGGATTATCTGATAAGAGAAAGCACTCAAAGGTTTGCGTCATTTGTTCTCTCAGTCAAGTATGGCGGAAGAATCCGTCACTTTCCCATAGAACTGACTCCCAGCGGTCGATATGTGATTGGAAAGCACGCTTTTGATGGTTTGACGGAGATTGTTACCTTCTACAAACAAAATGCTTTATTTTATACCCAAAACAAGAACCCCGTTACCCTGGGAGATTCATTCCGAGGAATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCM2	NADPH oxidase organizer 1 OS=Mus musculus OX=10090 GN=Noxo1 PE=1 SV=2
A7EK16	Myosin-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=myoA PE=3 SV=1
A6SED8	Myosin-1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=myoA PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004308 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR051228 all species →	Family	NADPH Oxidase and PX Domain-Containing	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706 all species →	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016176 all species →	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24032	SH3PXD2; SH3 and PX domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635850.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

65TPM > 0

2Conditions

71.7Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	35	13.93	71.74
all_coral_tissue · baseline	38	30	9.74	25.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	71.74
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.32
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.64
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.09
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.04
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.19
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.55
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.76
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.52
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.03
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.72
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.29
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.88
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.75
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.48
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.32
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.08
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.56
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.03
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.67
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.60
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.59
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.50
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.81
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.41
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.33
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.63
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.21
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.98
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.81
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.67
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.57
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.99
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.56
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.56
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.30
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.52
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.14
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.72
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.61
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.51
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.39
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.66
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.59
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.52
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.24
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.77
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.77
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.68
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.62
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.43
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.55
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.30
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.09
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.73
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.73
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.45
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.93
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.45
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.09
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.60
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.28
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.45
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.08
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.81
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.