Detailed information of XP_074635902.1 in Acropora palmata

Genomic Location: NC_133891.1:5926378...6020964
NR annotation: XP_044173762.1, LOW QUALITY PROTEIN: nesprin-1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q91ZU6Dystonin OS=Mus musculus OX=10090 GN=Dst PE=1 SV=2
Q9QXZ0Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4 OS=Mus musculus OX=10090 GN=Macf1 PE=1 SV=2
Q03001Dystonin OS=Homo sapiens OX=9606 GN=DST PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001024 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00435
all species →		SpectrinSpectrin repeatDomainInterproscan
PF17902
all species →		SH3_10SH3 domainDomainInterproscan
PF02187
all species →		GAS2Growth-Arrest-Specific Protein 2 DomainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159
all species →		RepeatSpectrin/alpha-actininInterproscan
IPR002017
all species →		RepeatSpectrin repeatInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan
IPR003108
all species →		DomainGAR domainInterproscan
IPR036534
all species →		Homologous_superfamilyGAR domain superfamilyInterproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR041615
all species →		DomainDesmoplakin, SH3 domainInterproscan
IPR002048
all species →		DomainEF-hand domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915
all species →		SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan
GO:0003786
all species →		Molecular Functionactin lateral bindingInterproscan
GO:0005826
all species →		Cellular Componentactomyosin contractile ringInterproscan
GO:0030036
all species →		Biological Processactin cytoskeleton organizationInterproscan
GO:0030054
all species →		Cellular Componentcell junctionInterproscan
GO:0030864
all species →		Cellular Componentcortical actin cytoskeletonInterproscan
GO:0032432
all species →		Cellular Componentactin filament bundleInterproscan
GO:0042995
all species →		Cellular Componentcell projectionInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan
GO:0051017
all species →		Biological Processactin filament bundle assemblyInterproscan
GO:1903478
all species →		Biological Processobsolete actin filament bundle convergence involved in mitotic contractile ring assemblyInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10382DST; dystonin-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074635902.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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