Gene detail

Detailed information of XP_074636282.1 in Acropora palmata

Genomic Location: NC_133891.1:17216698...17227599
NR annotation: XP_029185339.2, LOW QUALITY PROTEIN: putative Polycomb group protein ASXL2 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074636282.1

ATGAGTGCGGAGAAAGGCGAAACTAAGAAGAAAAAGGGTTTGACATGGGCTGAAGCGGCGAAGCAGGTGCTCGAAAGGTCTGTTGAACCGCTCACGCACAAAGACATCCTCAAGGTCATACAGGATGAAGGTCTACGCGATTTAAGCCGTGGTAATGCTCCGCTGGCCTGTTTGAATGCCATGCTGCATCACCATTCCAGAGGTCCAAATGACCTCTTTGTAAAGGTTGAAGGACGAATGAGCTGTTACAAACTTAATCCTAATAGAGTGGAAAGCCCTGGCGAAAATTCCACGCATGACTCGGATTCAGATCTTGCAAGTATGCCTGAGGACACAGAGTTCAACCATTTCTCAGACAAGGATAGCCGTCATCTCACCAATGGAAAAGTCAAAATACCCCTGGGAACTAAAGAGATTGAGATGCCCCAACTGAAGCCACCTCTACCCAATCCACCTCCTAGGGATTCTGAACTAAAGCCCTCCCTCACCAAGGATGGTCGACTGCAGAAGAAACGAGGTCCCAAACCAGGGCCCCGCAGCTCTTCTGCAAACAAAAGACCAAGATTGACCAGTAGCCGACCTGTTCCAAAAACAGCACTGAAAAATCTGAAAGTAGGGACAGTGGAGAATGATTCTAGTTTGAATGTCAAAGAAAGTAGCGCAAAGGAAAAGTTACCATCTACGCTTGTTGAACCTTCATCTAAACTCATCCCTCCATCCAGTCCATCTATATCCCCAAGTACCGTAGCCAATCACAGTTTTCTGAGGCTTCCACGCTCAGTGGCGAATGACATGGATGGTAAAGAACAGCTGGAGAAATTTTCTGATCTTTGGACCAATTCCAAGCCACGAAGGTACAAGAAAATGAGTGTTGCTGCTCAGCTGAAAAGAACTAAAGAAGGGCGCATAGATGTTTCAACACCAGATTCTATTCTTACCAGTATTCCTCTTAGGACCCTCATTAGCCAAAGGACGTTTAACATGCTTCCAGCACTCTATCAATACCAACTTGTAACGTTACTGCCCAAAGTTGACCAATCTGTGGGTAATGATGGAGGCCTAAGACCATCGCATTCCGCATTCACCAATGAGTTTTTTGCCAGTGCTTGTCATTCTTGGAAGGACCGGCTTCAAGAAGGTGATTTTATGACAGATATGCAACAAAAAATGAAACAGGAAGAGGAGAGGCTGGCAAAGCTTGACCCATGGAAGGCCAAGTTCTTTGAACCTGTCTGGGGAAAAAGAACACTCTCCGAAACAGATTCCTCATCCCAAGATCTGGCGCATGCGTATTTCACAGCACCTCTTTCACCAGCCCCAGCTGTTTCACCTAGGAGCTCTCTGCCCTCCAGCCACAGGGACGCCAACCAGAACAGGTCACAGTACAACTCAACTAGAGCACTGACAGTTCCCCTCAAGAAGCTTCCCTCTCACTGCCTTCCAAAGCGGGTCACCGAATCCAGGAGATCAGAAGCCGCCAAACAACTGAGAGCCAATTCAAACGCAAGGCCCTCTCGGCCGCGTTCTATTCCCATATTTCGAATGGTGACCGTGGCCACAGCCACGGAGGCGCTGAAAGCGATTAGGACTTGCGCACCCGATAATATGCTCACGACCAGTACAATTTACACGCGAAAAAGGACGTTAAAAATACCGGAGTCGGCTTCAGATGAATGGCTCACCAAAGAATCAACAACGACGCCTTTATTGAGTGCATCTATTCTTAATACTGACACTGTTGATCTACGCGCGCCGGCGACACTTATAAAGCAGAGACCTCCATCTAGGGCTGCTATGCAGAAGCAGGTAGCCGACAGGGAGAATTCGTCGCGTCGATCCACCTCGAGTACCAGTACGAAGGGCTCGATTCCCAATACTGTTGCTTCGAAAAGCTTCAGTCGGTCCATGTTGCTAAAAAGTTGCTCATGTCGCTTAAAAGCCATGGATGTGTGTAAAAAATGTGGTGCTTTCTGCCACGATGACTGCATCAGTGCAGCGCAGCTCTGCAGTGCATGCGTCAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59598	Polycomb group protein ASXL1 OS=Mus musculus OX=10090 GN=Asxl1 PE=1 SV=1
Q8IXJ9	Polycomb group protein ASXL1 OS=Homo sapiens OX=9606 GN=ASXL1 PE=1 SV=4
Q76L83	Putative Polycomb group protein ASXL2 OS=Homo sapiens OX=9606 GN=ASXL2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13919 all species →	ASXH	Asx homology domain	Domain	Interproscan
PF05066 all species →	HARE-HTH	HB1, ASXL, restriction endonuclease HTH domain	Family	Interproscan
PF13922 all species →	PHD_3	PHD domain of transcriptional enhancer, Asx	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028020 all species →	Domain	ASX, DEUBAD domain	Interproscan
IPR044867 all species →	Domain	DEUBAD domain	Interproscan
IPR024811 all species →	Family	Polycomb protein ASX/ASX-like	Interproscan
IPR007759 all species →	Domain	ASXL, HARE-HTH domain	Interproscan
IPR026905 all species →	Domain	Protein ASX-like, PHD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13578 all species →	ADDITIONAL SEX COMBS LIKE PROTEIN ASXL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0035517 all species →	Cellular Component	PR-DUB complex	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11471	ASXL; additional sex combs-like protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.