Gene detail

Detailed information of XP_074636366.1 in Acropora palmata

Genomic Location: NC_133882.1:23082442...23111301
NR annotation: XP_029214044.2, nuclear pore complex protein Nup214-like isoform X1 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074636366.1

ATGGCCGATAGCGATAATGGATACCCGCCGGAGCGAGATGTCAAGGATTTCAGCTTCAAGCAAATGAGGAAGATACGAATGTTCGAATCGCCGCAAAATATCCCCACAGGTAGATCTTCTTTGCTTGATACTTCGTCCAAGTATGGATTGACTTTTGTGGGATGCCCTAGAGGGATAAAGATTATGAAAACAGAGACCATTGAAGCAATTCATGAGAAAGATGAGGGCAGTATGCAGAATGTTGTTTCACACTGTCCTTCCTCCTTTGTGGATTTGGGCAACCCTGTTCAGTTTGTGTGTCTCAGTGGTAATGGTCTTACACTCTCTGTCTGTTATACAAAAGAAAATGCTACAGTTATGGCATTCTTTGATGTACCAACCCTTGGAAGCAGTGACCTGTCTGGTGCCAAGTTCGGTGAAATCATTCTTAGCAAGGATGCAGAAGCTGTGGTGAACGTAGCATGGAATCCTGGTTTTCTTGGTCTTTTTGCTACTTGTCTAAGCTCTGGGTCTGTAATAGTGATGGAGTTGACTGAAACAGAAATCAAAACTCTGGCATCCCTTCCTGCAGATCACAAAGCCAGTGCAATTTGCTGGAGTCCCAAAGGCAAACAGCTTGTGGTGGGCCATTCAGATGGCAAGATAGTACAATATTCTCAGACCCTTGAAGCAAAGAGGGAAATAGAATGCCCAGAGATATTCAGTGATGATCCCCACTTTGTGACTGATGTTTTATGGATTTCAACGTATTTATTTGCTGTTGCCTACTCAAGCTTTGAAGAGGGGGATAGCCCAAAGTTTCTCCTCATTTCCACCTCAAATAATGGACCAGTAGTTATAACAAACTTTGATGACATCTATTTTGCAATGGGCGATGATCGGAAACCTGCATTTTATTTGAAGAATATCAGCGAGTGGAGCATAGTGGTGTCTGCATTTTCTAATGGACTTGAAGCTTCTGTTGTCGGAAAATATGGTGGAGAGGAAGTAAAAACTTGGGAAAAGTGGAGCTTTGAGGAAGATGCTCGTCCTTCAATGCCTTTAACCAGTAACAATGATGAGTCTTTTCCCATGGGCTTAGCCATAAACTTCAATTCAACAAGACCATTTGTGAAAGGCGAACAGAAGCTCCCCCCTGCACCTATTTTGATGATTCTGTCCACTGATGGTGTATTGGTACCATTTTATGTCCTGAATCAAACTCCAAATACAAAGCATGACATAGTTAAAGCCCCTGAACCTTTACCACTTGGAGGACAAAGGAAGCCAGTTGGGTATGGTTTACAGTCGGGTGGCACTACTCTACAAGCAACTAAGGGTAATTATGCCCCTGTAAATAAAAGTTCTTTACAATCTGGATCATTGGGAACATCTGGAAATATTCCAGTTGGTACATTTTCAAAGGAAAATTTGAAGCCATCTTCCTCTAGCCCAGCCTTGCTAGGGTCTCCAGGACATGCCTCATTTGGTGGACTGTCATTAGGTGGCCCCAAACAAACATCACCATCTGCAACTAATGTACCCAGTGCATTCTCTAAACAAAGTGTACAGTCATCTGGTTTATCTGGGAGTGCATCTTCAAGTGGTTTCTCTTTGACAAGCCAACAAGGTGGAATTGCAGCATTTAAGCCTGCATTGCAACCAGAATTGCCAGCTACACAGTTGAAAAAATCACAAGCAGTCACTAGTACACTTGTGAAGCCCACTCCCACATGTCAAACCCAGTCGAATGTTGCAAGTCATCTTGACTCTCCAGTTGACACTGCAGTGGGCTCAACTCAATCAAAGCAGGGATTCATTTTTGGAAGAGGTCAACCAGGACTGGACTCGGTGAACAAGCTTGGTTCAAAGTCCAATCAGCTTCCAGTTTCCAAGTCATCTGCTACAGCTGTGAAGGCAGACAGTTCAGCAGTGACATCATTTGAATCACCGGTGAAAGCATCAACCCCTGGTGCTGCTGTAAAAACAAAGGCAGAAGTCATCAGAAAGGCACCGCTTGTTCCTGTTTCAAAGAGCAATGTTATTGAAGCTTCTGTTTCTCAGAATATCCAAGAGGCGATCAATCACTTTAGTGATGAAATGGCTGCCTTACATGACTGTGTAAGGAAAATGCAGGAGAATTGTGGTTTAACAGATGATAACAATGATCTTGACCAGTTAAAACAGACCACAAATCAGCTTGGACGATCACTTGCAGAGCTCAAGGATACAACAAAGGATCAGCATAAGGATATTGATGAGGAGAAACGGAAACTCTTGGAAGCTTTTGAAATATTTGAAGATGCCAGAATCAGACAGGAACGGAAGAGTGACCCCAGATATGTCCAGTTGCTTAAGTCAAGAGCACTGGACCCAGTCAATGCAAATAAAATGAGAGACATAAGAAAATTGCACCTCTACCTCGATGAAAGTCTCAGAGAGGTCAATATGATTCTTGATGAACAGTGGAACAAAGAAAATGAGCGGAAAAGGTTCATTCCACGCCCAGCTCTTGATGAAATTTATAACACCCTGAAAATGAATCAAATGATCGCATTGGATCAAGAAGCTAGATTGGAGAAAATTGCAGAGGACATGCAGAAAAGAAAATTGCTATCAAATTCCTGGCGGAGAAATTTGACGAGCACAGACTCCGCAAGAGTCCCACTTGTGAAAGGCGCTTCGGCTGTGTATGAGCAAGAGCTTAAGTCGACTACACAGAGAACTTCACTAGTTTCAACTCCAATTTCCCCCAAGAAGAGAGCTCAGTTGAGGAGCATGCTTCAGAAAAGACGAAGCACCCCAGTAAGGCGAAGTATTATTGTTCCAAGCGCAATCACCAAAACTCCATCAGCGAAGCTAAATAAGTCTCAAATGCCGCTGTTATCCTCTACACCCGCTGTAACTGCAAGTGCCCTATCAGAGGAAACGATTGGTAAATCTGTCTTGAGAAGTCAATGGACAGTACAAGAGGAAGCGACATTACACCATGGTAATAGGGGTGTCTTAGATGGGAATGATCAAGAAGTTGCACACGCGACTGAAGAGCGTGGACCAAGGCACGATGCCTCTGAACGTGGACCTTCGGTTAGCTTTGTTGATGCTTCCTCCCCTGATGATGATAGTGGTGATACCGCTAAGCAAGCTTATAATCTTGAAGACGGACTGAAAAAGCCCCCTGTTGTTGTTGCTACACCTGAAGAAACTGAAAGTGCACCGGAAATTCCTGAATCCACTGATTCAACAGCTGCTTCTGGCGGGTTTAGCTTGGATGGCTCCACTGTTTTTAAGCCCGAAGAGACCAATTATGAATACCAGTCAAAGAAACCAATAGTTGTAACTTCGAAAGCGGCGGTTACAGCGGAATCTCAAACAGCATTAAACGCAACCGATACAGAACCGTCTAAACCATCCAGGGGCTCTTTTCATCCTGCTGTCACTGAGAAGACGTCTTCTTGTGAAGCAGTTTCAACCAAGAGTGAAGTGACTCCTTGTGTCAAACCTATCAGCGCGGACGTTCCTCCTAATGTGGCGGCAGGAATGGCTGCTATGAACCGGGCAAGTGCAGTGCAGAATGGTCTTCAGCTTCCAAGCAACAATAGCAACCTTGATCCTTCAGCGAGCATTGAGCCAGTTGCGCTTGTAGCTTACAAACCACAAACCCAAAAGCCTTCACCAAAGACAGGCGGTAATGAAGAGAATGCAGCCGCTAAGGCCATTGCAAATGCTGCCTTGATGGCGGCAACCGCAGAAGCAAAGAAACCGTCAGTAAAGCCACATTTTAGCACAGAGTTTGTCTTTAAGTCAACGGAAAGTGGTAAGCCAGGTCTTCCTGTGGTCACATTCAAACCACAGGCCCCACCTACTCCGTCTGATAGTCGTGCGACAGTGGCACCAAATGTCACTGTCAATCCTAAGTCTGTCAATAATTCTGCATTTGGCCCAACGGTGCCAACATCTTCTTCTGTTAGCTCCACAAGTGGATTGAGATTGTCCTCTTCAGGAACCTCGCCTGCTGCGCTATTTGGTCCTTTGCCCAGGTCCTCAGCTTCAACAGGTTTTGCCCCTCAACCTGGTCTTTTTAATCTTGGACCCCATCCGAAACCCTCTTCCTCAGCCCCAAATCTGTTGAGTTCCAGTATCAAAGGTGGCGATGCAATATCGTTCGGTCAAACAACTCTTTTGAGTTCAACAACAGCAAGTATTACACCAAGCCAAAGAGTCAGCAGGAATATATTTGCATCAAGTGAAGTGTCTTTACCGCCAACATCGATAACCGATGATCCAAAAGACGACAGCAAAAAGTCTAGTCTATCGTCGTCATCACAAGTAAAAGCAAGCATTACCAGTTCCAGCGGATTAGTTGCTCCTGTAACAACAGCCCCACTTCCATTCTCTTTATCGTCTATAAGTAGTGGATCACTCATGCAGAATCAGGTCTCACCTAGCAACAGTGGGATTGCACTCAACTCTGGTGTGAATGCAAGTTTGCCGGGATCAGATGTTTCAAGTTTGGCGACGTCATCGTCAGAGGATAAGAGTGCGGAGGCCAGTGTACCATCAGTAATTTCAAGATCAAGCGTTACCAGTCCCAGCGGGTTGATTCCATCTCCTGAAACAACAGCGCCACTTTCATTCTCTTTATCGTCTTTAAGTAGTGCATCGTTCATGCAGAATCAGGTCTCATCTAGCAACAGTGGGATTGCACTCAACTCTGGTGTGAATGCAGGTTTGCCGGGATCAGATGCTTCAAGTTTTTCGACATCACCGTCAGAGGATAAGAGTGCGGAGTCTAATGTATCGTCGTCTCAAATAAAAGCGAGCATTACCAGTTCCAGTGGATTAAATGCACCAGTAACAACAGCGCCACTTCCATTCTCTTTATCGCCTTTAAGTAGTGGATCGCTCATGCAGAATCAGATCTCACCTAGCAACAGTGGGATTGCACTCAACTCTGGTGTGAATGAAGGTTTGCCGGGATCAGATGTTTCAAGTTTTTCGGCATCATCGTCAGAGGATAAGAGTGCGGAGGCCAGTGTACCATCAGTAATTTCAAGATCAAGCGTTACCGGTCCCGGCGGGTTGATTCCATCTCAGATTTCCTTTTCGGCGCCAACCCTCAGTGGTGGATCGTTCTTTAAGAATCTTGCTTCCACTGGCAACAGCAACACTGGAAGTTCAGCCGGCGCAATTATCGGTACAGTTGGTAGCTCAACGAGCGTGTTGAATTCCCTGCTACGGTCGTCTGAGACTAGTAGCGCCGGTATTACTTCGTCTAATACAGCATTTGCACCAACTTCAGTAGCTGCTTTGTCCTCCGCGACGCCAACTGAAACCTTAGATGCAAGTGCAACAACTGCTTTTACTTCACCCAGTGTTGGTGCAGGTGGTTTTTTGACACCGACGCTTTTAGGAGGCAACAAGCCTGTTTTCGTGCCTGCTGAAAGCGCAGCCCCGACACTTACTCGTGCCTCGAGTATCCTTGGCTCAGTTTCGACCACAGTGCCTAGCACAACTGGCGTCTTGTTCGGGTCACCATCGATCAGTTCTATAGCTGCAGTTTCAACTCCCCTTACGACCTCCGTGGAGAGTAGTTTTCTTGCTGTTTCCGCTGGATCACCGGCTTCTCCTTCCTCTTCTGTTACCACCACAGCCAGTGCCTTGTTTTCAAGTATCATAAACGCTTTCACAAAAGAGTCAGCATCGATCAAAAGTCCTCTAGTGACAGTTATGTCATCGTCCCAATCAACAACTACGACTCTTCCCTCGGCCGGTGGTTCGTATACGTCTGAACCGAGCAGAGTTTTTGCCAGCCCAATCAGTGCTTTTGGAGCAGTCTCAACTGCGGATGGTTCCCTAGGGTTTGGATCATTGGCTAAGGCTGCCACCTCATCATCAAGTGGCAGCTTATTTGGAGCGTCGCCATCGACTGCCTTCGCTCCCACATCAGGTTTTGGGTCTTTCACTACTACTGCTGGTTCTCAAGGAAACACCTTTGGTTCTGCCCCTGTCTTTGGCTCACCCACCGCATCACCCGCCGCATCTTTGTCCTTTGGAGCAAAACCGTCGTTTGGCCAGTCATCGTTCATTACCACGAGCAGTAGTGATTTCAGTCAAACGGCATCAAAGCCATCAGAGAATGCTTTAGGCTTTGGTTTTACTGGGTTTGGCTTAGGAGGACCAGGGCCTTCACAAACGAACAATGAAAATCCATTTATAGTAGCGCAAGGATTTGCAGTCCCAGCAACGACACGTGAGTCGTCCTTGTTCAGTGGAAAGTCTGGAGAAGATGTGTTTAAGAGTTCTCTCAGTACTGGCCCGTTTTCGCAATCTGCATTTGGCTCTCCATCTTCCGGTGGATTTTCTGGAGGCACGTTTAGTTCACAGAACAAGAGCGTGTTGTCTTCTGGGTTTGGTTTCGGTTCTTCGTCAATCCCCGCGGGGAATTCAGGGTTTGGCGTCTCGAATCCCTTTGGTTCACCCTCTGCTTCGGCTTCTGCATTTGGTGGTGCACCATCGTTTGGTTCCACTCCCGCCTTTGGTGGCGTTCCTGCATTTGGTTGCTCTCCTCAAGGAGGACTTAGCGCTACTCCGTCAACAGGGGTCTTTGGCTCTGGAGGTTCGGGAATGTTTGGACAGTCATCAGGTTCTCCTTCATTCGGTGCCTTAGCGTCACAGACAGGTGTCCCTTCTTTCGGAGCACTGGCTGGCCAGAGCTCTTCACAAGTCGGGTTCGGAGGCCTTCAACCACAACAGCAACAATCGACTCCTTCCTTTGGTTCGTTTGGTGGCAGCTCACAAAGTCCCAGTGGTTCCTCTTTCTCGCAATGGCGATGA

Protein

XP_074636366.1

MADSDNGYPPERDVKDFSFKQMRKIRMFESPQNIPTGRSSLLDTSSKYGLTFVGCPRGIKIMKTETIEAIHEKDEGSMQNVVSHCPSSFVDLGNPVQFVCLSGNGLTLSVCYTKENATVMAFFDVPTLGSSDLSGAKFGEIILSKDAEAVVNVAWNPGFLGLFATCLSSGSVIVMELTETEIKTLASLPADHKASAICWSPKGKQLVVGHSDGKIVQYSQTLEAKREIECPEIFSDDPHFVTDVLWISTYLFAVAYSSFEEGDSPKFLLISTSNNGPVVITNFDDIYFAMGDDRKPAFYLKNISEWSIVVSAFSNGLEASVVGKYGGEEVKTWEKWSFEEDARPSMPLTSNNDESFPMGLAINFNSTRPFVKGEQKLPPAPILMILSTDGVLVPFYVLNQTPNTKHDIVKAPEPLPLGGQRKPVGYGLQSGGTTLQATKGNYAPVNKSSLQSGSLGTSGNIPVGTFSKENLKPSSSSPALLGSPGHASFGGLSLGGPKQTSPSATNVPSAFSKQSVQSSGLSGSASSSGFSLTSQQGGIAAFKPALQPELPATQLKKSQAVTSTLVKPTPTCQTQSNVASHLDSPVDTAVGSTQSKQGFIFGRGQPGLDSVNKLGSKSNQLPVSKSSATAVKADSSAVTSFESPVKASTPGAAVKTKAEVIRKAPLVPVSKSNVIEASVSQNIQEAINHFSDEMAALHDCVRKMQENCGLTDDNNDLDQLKQTTNQLGRSLAELKDTTKDQHKDIDEEKRKLLEAFEIFEDARIRQERKSDPRYVQLLKSRALDPVNANKMRDIRKLHLYLDESLREVNMILDEQWNKENERKRFIPRPALDEIYNTLKMNQMIALDQEARLEKIAEDMQKRKLLSNSWRRNLTSTDSARVPLVKGASAVYEQELKSTTQRTSLVSTPISPKKRAQLRSMLQKRRSTPVRRSIIVPSAITKTPSAKLNKSQMPLLSSTPAVTASALSEETIGKSVLRSQWTVQEEATLHHGNRGVLDGNDQEVAHATEERGPRHDASERGPSVSFVDASSPDDDSGDTAKQAYNLEDGLKKPPVVVATPEETESAPEIPESTDSTAASGGFSLDGSTVFKPEETNYEYQSKKPIVVTSKAAVTAESQTALNATDTEPSKPSRGSFHPAVTEKTSSCEAVSTKSEVTPCVKPISADVPPNVAAGMAAMNRASAVQNGLQLPSNNSNLDPSASIEPVALVAYKPQTQKPSPKTGGNEENAAAKAIANAALMAATAEAKKPSVKPHFSTEFVFKSTESGKPGLPVVTFKPQAPPTPSDSRATVAPNVTVNPKSVNNSAFGPTVPTSSSVSSTSGLRLSSSGTSPAALFGPLPRSSASTGFAPQPGLFNLGPHPKPSSSAPNLLSSSIKGGDAISFGQTTLLSSTTASITPSQRVSRNIFASSEVSLPPTSITDDPKDDSKKSSLSSSSQVKASITSSSGLVAPVTTAPLPFSLSSISSGSLMQNQVSPSNSGIALNSGVNASLPGSDVSSLATSSSEDKSAEASVPSVISRSSVTSPSGLIPSPETTAPLSFSLSSLSSASFMQNQVSSSNSGIALNSGVNAGLPGSDASSFSTSPSEDKSAESNVSSSQIKASITSSSGLNAPVTTAPLPFSLSPLSSGSLMQNQISPSNSGIALNSGVNEGLPGSDVSSFSASSSEDKSAEASVPSVISRSSVTGPGGLIPSQISFSAPTLSGGSFFKNLASTGNSNTGSSAGAIIGTVGSSTSVLNSLLRSSETSSAGITSSNTAFAPTSVAALSSATPTETLDASATTAFTSPSVGAGGFLTPTLLGGNKPVFVPAESAAPTLTRASSILGSVSTTVPSTTGVLFGSPSISSIAAVSTPLTTSVESSFLAVSAGSPASPSSSVTTTASALFSSIINAFTKESASIKSPLVTVMSSSQSTTTTLPSAGGSYTSEPSRVFASPISAFGAVSTADGSLGFGSLAKAATSSSSGSLFGASPSTAFAPTSGFGSFTTTAGSQGNTFGSAPVFGSPTASPAASLSFGAKPSFGQSSFITTSSSDFSQTASKPSENALGFGFTGFGLGGPGPSQTNNENPFIVAQGFAVPATTRESSLFSGKSGEDVFKSSLSTGPFSQSAFGSPSSGGFSGGTFSSQNKSVLSSGFGFGSSSIPAGNSGFGVSNPFGSPSASASAFGGAPSFGSTPAFGGVPAFGCSPQGGLSATPSTGVFGSGGSGMFGQSSGSPSFGALASQTGVPSFGALAGQSSSQVGFGGLQPQQQQSTPSFGSFGGSSQSPSGSSFSQWR

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80U93	Nuclear pore complex protein Nup214 OS=Mus musculus OX=10090 GN=Nup214 PE=1 SV=2
P35658	Nuclear pore complex protein Nup214 OS=Homo sapiens OX=9606 GN=NUP214 PE=1 SV=2
Q9W1X4	Nuclear pore complex protein Nup214 OS=Drosophila melanogaster OX=7227 GN=Nup214 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002726 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR026054 all species →	Family	Nuclear pore complex protein	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14317	NUP214, CAN; nuclear pore complex protein Nup214	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.