Gene detail

Detailed information of XP_074636380.1 in Acropora palmata

Genomic Location: NC_133882.1:23082442...23111301
NR annotation: XP_044180326.1, nuclear pore complex protein Nup214-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074636380.1

ATGGCCGATAGCGATAATGGATACCCGCCGGAGCGAGATGTCAAGGATTTCAGCTTCAAGCAAATGAGGAAGATACGAATGTTCGAATCGCCGCAAAATATCCCCACAGGTAGATCTTCTTTGCTTGATACTTCGTCCAAGTATGGATTGACTTTTGTGGGATGCCCTAGAGGGATAAAGATTATGAAAACAGAGACCATTGAAGCAATTCATGAGAAAGATGAGGGCAGTATGCAGAATGTTGTTTCACACTGTCCTTCCTCCTTTGTGGATTTGGGCAACCCTGTTCAGTTTGTGTGTCTCAGTGGTAATGGTCTTACACTCTCTGTCTGTTATACAAAAGAAAATGCTACAGTTATGGCATTCTTTGATGTACCAACCCTTGGAAGCAGTGACCTGTCTGGTGCCAAGTTCGGTGAAATCATTCTTAGCAAGGATGCAGCTGTGGTGAACGTAGCATGGAATCCTGGTTTTCTTGGTCTTTTTGCTACTTGTCTAAGCTCTGGGTCTGTAATAGTGATGGAGTTGACTGAAACAGAAATCAAAACTCTGGCATCCCTTCCTGCAGATCACAAAGCCAGTGCAATTTGCTGGAGTCCCAAAGGCAAACAGCTTGTGGTGGGCCATTCAGATGGCAAGATAGTACAATATTCTCAGACCCTTGAAGCAAAGAGGGAAATAGAATGCCCAGAGATATTCAGTGATGATCCCCACTTTGTGACTGATGTTTTATGGATTTCAACGTATTTATTTGCTGTTGCCTACTCAAGCTTTGAAGAGGGGGATAGCCCAAAGTTTCTCCTCATTTCCACCTCAAATAATGGACCAGTAGTTATAACAAACTTTGATGACATCTATTTTGCAATGGGCGATGATCGGAAACCTGCATTTTATTTGAAGAATATCAGCGAGTGGAGCATAGTGGTGTCTGCATTTTCTAATGGACTTGAAGCTTCTGTTGTCGGAAAATATGGTGGAGAGGAAGTAAAAACTTGGGAAAAGTGGAGCTTTGAGGAAGATGCTCGTCCTTCAATGCCTTTAACCAGTAACAATGATGAGTCTTTTCCCATGGGCTTAGCCATAAACTTCAATTCAACAAGACCATTTGTGAAAGGCGAACAGAAGCTCCCCCCTGCACCTATTTTGATGATTCTGTCCACTGATGGTGTATTGGTACCATTTTATGTCCTGAATCAAACTCCAAATACAAAGCATGACATAGTTAAAGCCCCTGAACCTTTACCACTTGGAGGACAAAGGAAGCCAGTTGGGTATGGTTTACAGTCGGGTGGCACTACTCTACAAGCAACTAAGGGTAATTATGCCCCTGTAAATAAAAGTTCTTTACAATCTGGATCATTGGGAACATCTGGAAATATTCCAGTTGGTACATTTTCAAAGGAAAATTTGAAGCCATCTTCCTCTAGCCCAGCCTTGCTAGGGTCTCCAGGACATGCCTCATTTGGTGGACTGTCATTAGGTGGCCCCAAACAAACATCACCATCTGCAACTAATGTACCCAGTGCATTCTCTAAACAAAGTGTACAGTCATCTGGTTTATCTGGGAGTGCATCTTCAAGTGGTTTCTCTTTGACAAGCCAACAAGGTGGAATTGCAGCATTTAAGCCTGCATTGCAACCAGAATTGCCAGCTACACAGTTGAAAAAATCACAAGCAGTCACTAGTACACTTGTGAAGCCCACTCCCACATGTCAAACCCAGTCGAATGTTGCAAGTCATCTTGACTCTCCAGTTGACACTGCAGTGGGCTCAACTCAATCAAAGCAGGGATTCATTTTTGGAAGAGGTCAACCAGGACTGGACTCGGTGAACAAGCTTGGTTCAAAGTCCAATCAGCTTCCAGTTTCCAAGTCATCTGCTACAGCTGTGAAGGCAGACAGTTCAGCAGTGACATCATTTGAATCACCGGTGAAAGCATCAACCCCTGGTGCTGCTGTAAAAACAAAGGCAGAAGTCATCAGAAAGGCACCGCTTGTTCCTGTTTCAAAGAGCAATGTTATTGAAGCTTCTGTTTCTCAGAATATCCAAGAGGCGATCAATCACTTTAGTGATGAAATGGCTGCCTTACATGACTGTGTAAGGAAAATGCAGGAGAATTGTGGTTTAACAGATGATAACAATGATCTTGACCAGTTAAAACAGACCACAAATCAGCTTGGACGATCACTTGCAGAGCTCAAGGATACAACAAAGGATCAGCATAAGGATATTGATGAGGAGAAACGGAAACTCTTGGAAGCTTTTGAAATATTTGAAGATGCCAGAATCAGACAGGAACGGAAGAGTGACCCCAGATATGTCCAGTTGCTTAAGTCAAGAGCACTGGACCCAGTCAATGCAAATAAAATGAGAGACATAAGAAAATTGCACCTCTACCTCGATGAAAGTCTCAGAGAGGTCAATATGATTCTTGATGAACAGTGGAACAAAGAAAATGAGCGGAAAAGGTTCATTCCACGCCCAGCTCTTGATGAAATTTATAACACCCTGAAAATGAATCAAATGATCGCATTGGATCAAGAAGCTAGATTGGAGAAAATTGCAGAGGACATGCAGAAAAGAAAATTGCTATCAAATTCCTGGCGGAGAAATTTGACGAGCACAGACTCCGCAAGAGTCCCACTTGTGAAAGGCGCTTCGGCTGTGTATGAGCAAGAGCTTAAGTCGACTACACAGAGAACTTCACTAGTTTCAACTCCAATTTCCCCCAAGAAGAGAGCTCAGTTGAGGAGCATGCTTCAGAAAAGACGAAGCACCCCAGTAAGGCGAAGTATTATTGTTCCAAGCGCAATCACCAAAACTCCATCAGCGAAGCTAAATAAGTCTCAAATGCCGCTGTTATCCTCTACACCCGCTGTAACTGCAAGTGCCCTATCAGAGGAAACGATTGGTAAATCTGTCTTGAGAAGTCAATGGACAGTACAAGAGGAAGCGACATTACACCATGGTAATAGGGGTGTCTTAGATGGGAATGATCAAGAAGTTGCACACGCGACTGAAGAGCGTGGACCAAGGCACGATGCCTCTGAACGTGGACCTTCGGTTAGCTTTGTTGATGCTTCCTCCCCTGATGATGATAGTGGTGATACCGCTAAGCAAGCTTATAATCTTGAAGACGGACTGAAAAAGCCCCCTGTTGTTGTTGCTACACCTGAAGAAACTGAAAGTGCACCGGAAATTCCTGAATCCACTGATTCAACAGCTGCTTCTGGCGGGTTTAGCTTGGATGGCTCCACTGTTTTTAAGCCCGAAGAGACCAATTATGAATACCAGTCAAAGAAACCAATAGTTGTAACTTCGAAAGCGGCGGTTACAGCGGAATCTCAAACAGCATTAAACGCAACCGATACAGAACCGTCTAAACCATCCAGGGGCTCTTTTCATCCTGCTGTCACTGAGAAGACGTCTTCTTGTGAAGCAGTTTCAACCAAGAGTGAAGTGACTCCTTGTGTCAAACCTATCAGCGCGGACGTTCCTCCTAATGTGGCGGCAGGAATGGCTGCTATGAACCGGGCAAGTGCAGTGCAGAATGGTCTTCAGCTTCCAAGCAACAATAGCAACCTTGATCCTTCAGCGAGCATTGAGCCAGTTGCGCTTGTAGCTTACAAACCACAAACCCAAAAGCCTTCACCAAAGACAGGCGGTAATGAAGAGAATGCAGCCGCTAAGGCCATTGCAAATGCTGCCTTGATGGCGGCAACCGCAGAAGCAAAGAAACCGTCAGTAAAGCCACATTTTAGCACAGAGTTTGTCTTTAAGTCAACGGAAAGTGGTAAGCCAGGTCTTCCTGTGGTCACATTCAAACCACAGGCCCCACCTACTCCGTCTGATAGTCGTGCGACAGTGGCACCAAATGTCACTGTCAATCCTAAGTCTGTCAATAATTCTGCATTTGGCCCAACGGTGCCAACATCTTCTTCTGTTAGCTCCACAAGTGGATTGAGATTGTCCTCTTCAGGAACCTCGCCTGCTGCGCTATTTGGTCCTTTGCCCAGGTCCTCAGCTTCAACAGGTTTTGCCCCTCAACCTGGTCTTTTTAATCTTGGACCCCATCCGAAACCCTCTTCCTCAGCCCCAAATCTGTTGAGTTCCAGTATCAAAGGTGGCGATGCAATATCGTTCGGTCAAACAACTCTTTTGAGTTCAACAACAGCAAGTATTACACCAAGCCAAAGAGTCAGCAGGAATATATTTGCATCAAGTGAAGTGTCTTTACCGCCAACATCGATAACCGATGATCCAAAAGACGACAGCAAAAAGTCTAGTCTATCGTCGTCATCACAAGTAAAAGCAAGCATTACCAGTTCCAGCGGATTAGTTGCTCCTGTAACAACAGCCCCACTTCCATTCTCTTTATCGTCTATAAGTAGTGGATCACTCATGCAGAATCAGGTCTCACCTAGCAACAGTGGGATTGCACTCAACTCTGGTGTGAATGCAAGTTTGCCGGGATCAGATGTTTCAAGTTTGGCGACGTCATCGTCAGAGGATAAGAGTGCGGAGGCCAGTGTACCATCAGTAATTTCAAGATCAAGCGTTACCAGTCCCAGCGGGTTGATTCCATCTCCTGAAACAACAGCGCCACTTTCATTCTCTTTATCGTCTTTAAGTAGTGCATCGTTCATGCAGAATCAGGTCTCATCTAGCAACAGTGGGATTGCACTCAACTCTGGTGTGAATGCAGGTTTGCCGGGATCAGATGCTTCAAGTTTTTCGACATCACCGTCAGAGGATAAGAGTGCGGAGTCTAATGTATCGTCGTCTCAAATAAAAGCGAGCATTACCAGTTCCAGTGGATTAAATGCACCAGTAACAACAGCGCCACTTCCATTCTCTTTATCGCCTTTAAGTAGTGGATCGCTCATGCAGAATCAGATCTCACCTAGCAACAGTGGGATTGCACTCAACTCTGGTGTGAATGAAGGTTTGCCGGGATCAGATGTTTCAAGTTTTTCGGCATCATCGTCAGAGGATAAGAGTGCGGAGGCCAGTGTACCATCAGTAATTTCAAGATCAAGCGTTACCGGTCCCGGCGGGTTGATTCCATCTCAGATTTCCTTTTCGGCGCCAACCCTCAGTGGTGGATCGTTCTTTAAGAATCTTGCTTCCACTGGCAACAGCAACACTGGAAGTTCAGCCGGCGCAATTATCGGTACAGTTGGTAGCTCAACGAGCGTGTTGAATTCCCTGCTACGGTCGTCTGAGACTAGTAGCGCCGGTATTACTTCGTCTAATACAGCATTTGCACCAACTTCAGTAGCTGCTTTGTCCTCCGCGACGCCAACTGAAACCTTAGATGCAAGTGCAACAACTGCTTTTACTTCACCCAGTGTTGGTGCAGGTGGTTTTTTGACACCGACGCTTTTAGGAGGCAACAAGCCTGTTTTCGTGCCTGCTGAAAGCGCAGCCCCGACACTTACTCGTGCCTCGAGTATCCTTGGCTCAGTTTCGACCACAGTGCCTAGCACAACTGGCGTCTTGTTCGGGTCACCATCGATCAGTTCTATAGCTGCAGTTTCAACTCCCCTTACGACCTCCGTGGAGAGTAGTTTTCTTGCTGTTTCCGCTGGATCACCGGCTTCTCCTTCCTCTTCTGTTACCACCACAGCCAGTGCCTTGTTTTCAAGTATCATAAACGCTTTCACAAAAGAGTCAGCATCGATCAAAAGTCCTCTAGTGACAGTTATGTCATCGTCCCAATCAACAACTACGACTCTTCCCTCGGCCGGTGGTTCGTATACGTCTGAACCGAGCAGAGTTTTTGCCAGCCCAATCAGTGCTTTTGGAGCAGTCTCAACTGCGGATGGTTCCCTAGGGTTTGGATCATTGGCTAAGGCTGCCACCTCATCATCAAGTGGCAGCTTATTTGGAGCGTCGCCATCGACTGCCTTCGCTCCCACATCAGGTTTTGGGTCTTTCACTACTACTGCTGGTTCTCAAGGAAACACCTTTGGTTCTGCCCCTGTCTTTGGCTCACCCACCGCATCACCCGCCGCATCTTTGTCCTTTGGAGCAAAACCGTCGTTTGGCCAGTCATCGTTCATTACCACGAGCAGTAGTGATTTCAGTCAAACGGCATCAAAGCCATCAGAGAATGCTTTAGGCTTTGGTTTTACTGGGTTTGGCTTAGGAGGACCAGGGCCTTCACAAACGAACAATGAAAATCCATTTATAGTAGCGCAAGGATTTGCAGTCCCAGCAACGACACGTGAGTCGTCCTTGTTCAGTGGAAAGTCTGGAGAAGATGTGTTTAAGAGTTCTCTCAGTACTGGCCCGTTTTCGCAATCTGCATTTGGCTCTCCATCTTCCGGTGGATTTTCTGGAGGCACGTTTAGTTCACAGAACAAGAGCGTGTTGTCTTCTGGGTTTGGTTTCGGTTCTTCGTCAATCCCCGCGGGGAATTCAGGGTTTGGCGTCTCGAATCCCTTTGGTTCACCCTCTGCTTCGGCTTCTGCATTTGGTGGTGCACCATCGTTTGGTTCCACTCCCGCCTTTGGTGGCGTTCCTGCATTTGGTTGCTCTCCTCAAGGAGGACTTAGCGCTACTCCGTCAACAGGGGTCTTTGGCTCTGGAGGTTCGGGAATGTTTGGACAGTCATCAGGTTCTCCTTCATTCGGTGCCTTAGCGTCACAGACAGGTGTCCCTTCTTTCGGAGCACTGGCTGGCCAGAGCTCTTCACAAGTCGGGTTCGGAGGCCTTCAACCACAACAGCAACAATCGACTCCTTCCTTTGGTTCGTTTGGTGGCAGCTCACAAAGTCCCAGTGGTTCCTCTTTCTCGCAATGGCGATGA

Transcript

Protein

XP_074636380.1

MADSDNGYPPERDVKDFSFKQMRKIRMFESPQNIPTGRSSLLDTSSKYGLTFVGCPRGIKIMKTETIEAIHEKDEGSMQNVVSHCPSSFVDLGNPVQFVCLSGNGLTLSVCYTKENATVMAFFDVPTLGSSDLSGAKFGEIILSKDAAVVNVAWNPGFLGLFATCLSSGSVIVMELTETEIKTLASLPADHKASAICWSPKGKQLVVGHSDGKIVQYSQTLEAKREIECPEIFSDDPHFVTDVLWISTYLFAVAYSSFEEGDSPKFLLISTSNNGPVVITNFDDIYFAMGDDRKPAFYLKNISEWSIVVSAFSNGLEASVVGKYGGEEVKTWEKWSFEEDARPSMPLTSNNDESFPMGLAINFNSTRPFVKGEQKLPPAPILMILSTDGVLVPFYVLNQTPNTKHDIVKAPEPLPLGGQRKPVGYGLQSGGTTLQATKGNYAPVNKSSLQSGSLGTSGNIPVGTFSKENLKPSSSSPALLGSPGHASFGGLSLGGPKQTSPSATNVPSAFSKQSVQSSGLSGSASSSGFSLTSQQGGIAAFKPALQPELPATQLKKSQAVTSTLVKPTPTCQTQSNVASHLDSPVDTAVGSTQSKQGFIFGRGQPGLDSVNKLGSKSNQLPVSKSSATAVKADSSAVTSFESPVKASTPGAAVKTKAEVIRKAPLVPVSKSNVIEASVSQNIQEAINHFSDEMAALHDCVRKMQENCGLTDDNNDLDQLKQTTNQLGRSLAELKDTTKDQHKDIDEEKRKLLEAFEIFEDARIRQERKSDPRYVQLLKSRALDPVNANKMRDIRKLHLYLDESLREVNMILDEQWNKENERKRFIPRPALDEIYNTLKMNQMIALDQEARLEKIAEDMQKRKLLSNSWRRNLTSTDSARVPLVKGASAVYEQELKSTTQRTSLVSTPISPKKRAQLRSMLQKRRSTPVRRSIIVPSAITKTPSAKLNKSQMPLLSSTPAVTASALSEETIGKSVLRSQWTVQEEATLHHGNRGVLDGNDQEVAHATEERGPRHDASERGPSVSFVDASSPDDDSGDTAKQAYNLEDGLKKPPVVVATPEETESAPEIPESTDSTAASGGFSLDGSTVFKPEETNYEYQSKKPIVVTSKAAVTAESQTALNATDTEPSKPSRGSFHPAVTEKTSSCEAVSTKSEVTPCVKPISADVPPNVAAGMAAMNRASAVQNGLQLPSNNSNLDPSASIEPVALVAYKPQTQKPSPKTGGNEENAAAKAIANAALMAATAEAKKPSVKPHFSTEFVFKSTESGKPGLPVVTFKPQAPPTPSDSRATVAPNVTVNPKSVNNSAFGPTVPTSSSVSSTSGLRLSSSGTSPAALFGPLPRSSASTGFAPQPGLFNLGPHPKPSSSAPNLLSSSIKGGDAISFGQTTLLSSTTASITPSQRVSRNIFASSEVSLPPTSITDDPKDDSKKSSLSSSSQVKASITSSSGLVAPVTTAPLPFSLSSISSGSLMQNQVSPSNSGIALNSGVNASLPGSDVSSLATSSSEDKSAEASVPSVISRSSVTSPSGLIPSPETTAPLSFSLSSLSSASFMQNQVSSSNSGIALNSGVNAGLPGSDASSFSTSPSEDKSAESNVSSSQIKASITSSSGLNAPVTTAPLPFSLSPLSSGSLMQNQISPSNSGIALNSGVNEGLPGSDVSSFSASSSEDKSAEASVPSVISRSSVTGPGGLIPSQISFSAPTLSGGSFFKNLASTGNSNTGSSAGAIIGTVGSSTSVLNSLLRSSETSSAGITSSNTAFAPTSVAALSSATPTETLDASATTAFTSPSVGAGGFLTPTLLGGNKPVFVPAESAAPTLTRASSILGSVSTTVPSTTGVLFGSPSISSIAAVSTPLTTSVESSFLAVSAGSPASPSSSVTTTASALFSSIINAFTKESASIKSPLVTVMSSSQSTTTTLPSAGGSYTSEPSRVFASPISAFGAVSTADGSLGFGSLAKAATSSSSGSLFGASPSTAFAPTSGFGSFTTTAGSQGNTFGSAPVFGSPTASPAASLSFGAKPSFGQSSFITTSSSDFSQTASKPSENALGFGFTGFGLGGPGPSQTNNENPFIVAQGFAVPATTRESSLFSGKSGEDVFKSSLSTGPFSQSAFGSPSSGGFSGGTFSSQNKSVLSSGFGFGSSSIPAGNSGFGVSNPFGSPSASASAFGGAPSFGSTPAFGGVPAFGCSPQGGLSATPSTGVFGSGGSGMFGQSSGSPSFGALASQTGVPSFGALAGQSSSQVGFGGLQPQQQQSTPSFGSFGGSSQSPSGSSFSQWR

Uniprot

Uniprot term	Description
Q80U93	Nuclear pore complex protein Nup214 OS=Mus musculus OX=10090 GN=Nup214 PE=1 SV=2
P35658	Nuclear pore complex protein Nup214 OS=Homo sapiens OX=9606 GN=NUP214 PE=1 SV=2
Q9W1X4	Nuclear pore complex protein Nup214 OS=Drosophila melanogaster OX=7227 GN=Nup214 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR026054	Family	Nuclear pore complex protein	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14317	NUP214, CAN; nuclear pore complex protein Nup214	-	Messenger RNA biogenesis	ko03019	deepkoala