Gene detail

Detailed information of XP_074636618.1 in Acropora palmata

Genomic Location: NC_133891.1:2790136...2805820
NR annotation: CAH3120158.1, unnamed protein product [Porites lobata]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074636618.1

ATGGATCATTTTGAATCCGAGGACACTGACATTACTTCTCAGAAGGAAAACGATCCCTTAAAAGCCAGGGAAGAAAACACAATGACTCAAAGTCATCAGGAACTCATAAATTCCGACACAAAACTTACAGTTATGCAACAGGTTGGAGGTTCACTATATACCCAGTCTCAGCAGCCTTTAAAGGCCAGAAATGTACCATTGCAATCACAAAGTCAGACACAACTTTTGGAGAAGTTTAGAAAGTTACGCCAATGGCAGCAACAGCAACAGCAAAGCATGTTGCGTCAACAACAACAGGCAATGGACACAATCAAGATGGAACAAAGTCAACTTCAAGCCATCTTGGCAGCTCAGAAGAGTTTTCAAGAGCAATGCAGCATTACAAGTTTCCCATTGAACCATGATGTTGAAAAGAAGGCAAGTCCACCTTCAATGCAAAATCAGCTGCAACAATTTCCTAAGGTGCCAATGCCAGAAAATGCAATGACAAGGACAGGAAACGCAGCTGATAATAGAGAACTTGTTGGACATACTGATCTTCTTAGATCTACCTCTAGTCATAACACATCACCAATGACATTTTATCATGGTAGTATGGGCATACACAGGAAAACAGGAGAGCTCCCTTTGATACAAGAGATGGAAGTAGACCTGGAGGTTCCCCAAAAAGAAACTGAATGTTACAAGCAACAAGGCAGAGAAAAAGAGGAAGAGCAAAGTATTGTATCATTTAATACAACACTGTACCCGATGATGTGGAACTCAACAAATTATCGCCTCCCAATAGAAGCAATACCTCTGTCATCTGGTACACAGGCATTGCAAAGGAGCACAGTTTTGGCCGCACCAAACGTGTACAGTCCAATGTTTTTTTTAGGAGCAAAACCCAAGGAAATGCTTGATGATGCTCAGAGTTGTCAAACTCCAAATCCAAATGAAGAACTTGGCCCTGTCAAAGCAGTTCAGAGCTGTTCAGGAAGACAAAGCAGAGGAGATAAAAAGGAGATGGATCCAGTAGCAATGCAGCAAACTCAACAACTTAAAAGGCTATGGAGTCACAATCCAGGAGCTCATTTGCTTGCAAGTGTTGAATCTGAGTTTGATGAAATATCAGAAGCAGATGCTATGAGTGGAGTGTATCCTCTGTATGACTCTGAGTCTGAAATAGGCAGTAATGAGATCGATGATAAACAGATGGATAAAGGGGAAGAGGATGATGATTGCTATGCGGAAGAATGTGAAGAAAGTATTGCAAAGGAAACAACTGTGATAGATCTGAACAAGTCTGCTGGAAAGGCTGATGACCAAAAGGAAGAAAGTAGAAATGATGCTGATGATGAAGCAAGGCCTATCAAACCAGGCATAGGGGAGGGATCGTCAGTCAGGACATTTGAACAGCTTTTGGAGGAACAACTCAAACTTGATGAGGCTTCTAAACCAGAGGTTGTATCAAAAGTTGTGACCCAAAAGCCACAAAGGACCTTTCTCAGAAAAGGCCAAGGACTTGCGAGATTCAAAGGAAAATCAACATCAGATAGAACTGTTGGTCAACCACACAAACCATCAAGTCAGCCTGTGGTAGTACCCAAGAAAAGTGAAAAGAAAACTGGGAATGTTGTGCTCAACAGCCTTTCTCAAGAACACAGGATACTATCTGTGGAAAGTGGTGGTCCTGTGGCACATGGCAGGGTAACACGCAAGGTAGCTTCAAAGAGTCCCAGGGGGCAGAATGGGGAGACTGGAGAAGATTCAGCTGGAAAGGGACAGCAGTCAAAACCATCAAGTGCACCACAAACAGAGTCAGGAAAAACAACTAATAAACCAAAAGCAGTATCACAGAGCAGTGTTTTCTCAAGAGCAGAGTGCATTGATAATCCACCAGTATTATTAAACAGTATTGATGCCTCATTTCAAGTAAGGTTACAAGAACTGGAAGAAAAGCAAGAGATTGAAGAAGAAGAGCTGCAAGAATTTGAGCTCTTGGAACAAGCTGCTGCAAATGAGTCGTTCTCTTCCAACTCCTCAGTAGTTGTCCGAGTTCTTTCCAAAGCCCGAGGCAATGCCATGGGTGGAAAGCTGTTGAGCCGTGGACACAGTGTTATGAACAAGAAAGGTCGTGGAGGAGGTGTTATGAGTCCCGTTGACACAGGCTACAGCAGGGCAGATGCTAAATTTAATTCTTCAGCTGATCAGCCGGAGCTTTGTGATAGTGACAGTGAAGGAAGTGATATCACACTGAAAGAAATGAGTTTGGAAAGTGTGATAGAGGAAGGAGATGGTGACGAGAAGTCCAATCAAACAAGTGCGAACAGATGGCAAAAAGCTTCATTACAACTCGACGCAGTCTCCGCCTCACTTGTTTTGGATGACGACTTCGATGACGAAGAAACATGGGACGAAATAAAGAAGCAATCAGAAGGCAACGCTAAGGACATGAAAAATGATGACGACGATAGTGATGATGACAGCGATGTTACAATAAGTGATATATTTCCTCTCGTGTCGTCCACACCTCCTGCTCATCAAAAGAAGAACGATGGTGGGAATCCTGGCCAGACTGCCGACAGTGAAGCTGATTGTATGATGGCCTCGACACCTCCAACATCTGCCCTCGTCACTAAGCTCTTTCCTCAACTCAAGCCGAAAGTGAAAGCCGGTCAAAGTGGCACAAAACAATCAGCCACCGATGCACCGCAAAATCGATCAGGGGAAGAAAAGACGAAAACAGGAGATTCTGCTACTGATGCCGTTCAGAGTATTGCAGTGAGACAAAAACTAAAAGAACTGGAAACTGAGATTGGGAAGTTTAGAAGCGAGAACACAGCTCTGGCCAAAATGAGAGCCGAACGAGAAGAGGGTTTGAAGAAACTTCAAACTGAGATTGCCACGTTTGAGAAACAGAAAACAGAGGAACTTGAACGATTAGAGCAATTTAAAGAAGAGGAACTCAAGAAATTACGTCGCGAGAGACGCGTGTTTGAAAAATACCAGAAAGCTGCTCGAGCCATCCCCGGCAAGAAGGAACGGGATGAAATAGAGGCCTTAAGAGCGCAGGTAGCAGAATTGCAAGAGGAACTGAAGCGCCGTGAGTCACGTTGGTCAGCTGCATCAACGCGAAGCCGTCAGAGGATCGAGGCCCTGGAGCAGGAAAAACGGGAATTGCAGGATGAGATAAAACTGTTAGAGAAATATCGGTTGCAGCACTGGCGAGAGGAGGAACTGGCTAAGTCTAGAGAGGAAGAAGAGGCGAGATTGAAGAAACCTCTGCAGAGAAAGGTTGCGAAGACAACGGAAGAAGCTTCGTTAGAATCAGGTGCCAGGCCTCCTTTAAGCCACCGATCTCCTCCATTAAGATCCGATGTCCTCGATACAGCAGCGAGTTCCAAGCACGAAAACACTGCCATTGGGTCAGAAAGCAGACCTTCATCGGCTGAGACCGATGCCAGAGAAAATCATGCTGTGAACCTACAACAAGACGACCATTCCTCGTCAGATTCACAATCAAAGCTGATTGACGTGGTTCCAGGTGAGATGCACCCCATCAACAGAGCTGATTGGAATTTCGTTCGTAGCACCGAGCAATCAAAAACGAGCCCAAGAAGGACGAGCAAGACGCCAGATGGCAGCGAGAAAATGAAAAGGAACGTTCGCTTTCAGGACGAGTTTACGCCGCCTGTGAGTAGCTCCTTGGCTGACCAGAGAAGTGCCATTGAAAAAACAGAGACACAAGACCAACGACGAGAAATTATGCATTCAGACGGAAAGGTTGAAAAAGTTAACAGTGATGGCTCTCGAGTGATATCATTTACAAACGGAACAAGAAAAGAAATAAGTGCAGATGGCAAAACTGTCGTTGTTACCTTCTTTAACGGTGATATCAAACAGATTATGCCAGACCAAAGAGTGATTTACTACTATTCTGAAGCTCAGACTACACACACAACTTACCCTGATGGTTTGGAGGTGCTGCAGTTTCCCAGCAAACAAATCGAAAAACATTACCCAGATGGTACTAAGGAGATTACCTTCCCCGATCAGACCATCAAGTATCTGTACCCCAATGGCGCTGAGGAATGCGTGTTCAGCGACGGAACAATACAGAAAGTCAACAAAGATGGAGAGAGAACCATTGAGTTCCCAAATGGACAGCGAGAAATGCACACCAAATATTATAAAAAAAGAGAGTACCCGGATGGGACAGTAAAGACGGTCTATCCCGATGGTCGGACGGAGACCCGTTATGCTACGGGACGTGTGCGGGTAAAAGATCAGGAGGGCAGAGTATTGGTAGATTCTTCAGATCAAATGAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569L8	Centrosomal P4.1-associated protein OS=Mus musculus OX=10090 GN=Cpap PE=2 SV=2
Q9HC77	Centrosomal P4.1-associated protein OS=Homo sapiens OX=9606 GN=CPAP PE=1 SV=2
Q5BQN8	Centrosomal P4.1-associated protein OS=Pan troglodytes OX=9598 GN=CPAP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002991 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07202 all species →	Tcp10_C	T-complex protein 10 C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009852 all species →	Domain	Centromere protein J, C-terminal domain	Interproscan
IPR026581 all species →	Family	T-complex protein 10 family	Interproscan
IPR047002 all species →	Homologous_superfamily	T-complex protein 10, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10331 all species →	T COMPLEX PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061511 all species →	Biological Process	centriole elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11502	CENPJ; centromere protein J	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074636618.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

53TPM > 0

2Conditions

14.7Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	30	2.77	10.26
all_coral_tissue · baseline	38	23	4.32	14.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.26
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.06
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.82
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.44
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.06
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.51
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.30
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.13
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.10
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.80
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.42
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.40
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.21
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.04
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.79
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.61
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.15
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.97
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.90
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.66
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.66
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.17
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.14
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.02
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.76
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.76
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.53
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.36
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.34
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.87
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.65
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.89
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.17
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.44
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.70
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.56
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.12
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.07
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.42
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.23
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.08
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.48
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.36
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.92
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.25
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.35
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.07
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.78
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.58
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.09
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.91
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.87
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.20
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.