Detailed information of XP_074636680.1 in Acropora palmata

Genomic Location: NC_133891.1:1445939...1494593
NR annotation: XP_029194337.2, eIF-2-alpha kinase activator GCN1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92616Stalled ribosome sensor GCN1 OS=Homo sapiens OX=9606 GN=GCN1 PE=1 SV=7
E9PVA8Stalled ribosome sensor GCN1 OS=Mus musculus OX=10090 GN=Gcn1 PE=1 SV=1
Q54WR2eIF-2-alpha kinase activator GCN1 OS=Dictyostelium discoideum OX=44689 GN=gcn1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002543 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13646
all species →
HEAT_2HEAT repeatsRepeatInterproscan
PF13513
all species →
HEAT_EZHEAT-like repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR021133
all species →
RepeatHEAT, type 2Interproscan
IPR034085
all species →
DomainTOG domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23346
all species →
TRANSLATIONAL ACTIVATOR GCN1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006417
all species →
Biological Processregulation of translationInterproscan
GO:0019887
all species →
Molecular Functionprotein kinase regulator activityInterproscan
GO:0034198
all species →
Biological Processcellular response to amino acid starvationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074636680.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074636680.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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