Gene detail

Detailed information of XP_074636770.1 in Acropora palmata

Genomic Location: NC_133891.1:18634631...18648724
NR annotation: XP_029194575.2, DNA replication ATP-dependent helicase/nuclease DNA2-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074636770.1

ATGGGAAAATTTAGGTTAGCCAAAGGAGCTGGAAAAAGGACAAGAAGTAGCTCGGAGGAGGAGGAAAGAGGTCCAGTGCAGAAAAATATAAAAACCTACTTCGGCAAGGAATCCTGCCAGCTATGGACTACATTTGGTCACGAATCCAAACGACCTGGAAAAAGAAAGAGCCTGAAGCTGTCAACTAAAGAGGACAGCAAGTGCAATGAAACAAGTCCTCCTCTTGATACAAAAAGCAAAAGAAGTATTGAGTCCTCTCTTGGCATGGTTGACAAGCCACATATATCATTACAAAGCGCACAAAATATCACAGAGTTAAAGGAATTTACAAAGATATTGGAGCAAAATAGCAAGTTTAAGAAACCAGTCTTGACACACAAAAACACTTTGCTCACATCAACCAACAAAAGTGAACCACCTTTTAGAAAATCCACACCAACAACGAATGACCAAAGAAGTTCTAATGTTAATGATCTAAGTAATTCACCTATAGTACTTGATGAGGATGACGATGATTTGATCCCTCCAACACCATCTCCAGCGAGACAACAGAGTTTTGTCACTTGTGTTGACCATAGGTCTTCACTGTCAACCAGGCTCCCTCAAACCCATAGTGCCTTTGATGTTTTGACGGCTGATACATCATGTAATCCTTCTACAGTAGCTGGAAAACTGAGGGAGACCAATAGTTTGGCAACAGACACTCCATCCATAATTATTGAAAATGAACAATCTTCAAGTAATTTACAAATCTGCAATGATAAGACTGCTCCCAAAGAACAGCATTTATCAAAGATTAGCAGTCAAGATACCAAGGACCAGAAGGTGGAAACAACAGAAAACACTTTTTTGAACAAAAGTGGTGCAAATAATAATAATTATTGTTACAAAGATTTAAATATTTCATCCTATAAGTTTGAAGAATCTTCACCTACACTCACCACCAGTAGAAAGAAATATAAGATTTCCAGAAAACCAAAGCCTCCTAAATTACTAGCAAGCCCTTTGAAAAAACTTGAGAATTGTCAAACTAAGTCCTTGCTCAGGAACAAGCTGCCCTCGAAAAAGGTCGTGGAACAGCCCAACCAAGAGGAATCTAGTTGTGACAACATGCCATCAAAATGTGGTGTTCTAAGATCCCAAATGAAGAGACCACCAACAAAAGGAGCTTCTCCATTACAGAAAAGACTGCAAACAGAAGTAGTCTTGTATCCTAAGCAGTCTGTTAGGAATAATCTGTTGCCAAAGCTGGGTGAATGTATAGGGAGTAATCAATCCAATACTGAACTGGGGCAGCATGCAATAAATGTGGAAACAGAAAATATTTACGTGGAGGATAGATGTTTAATGAAAGAGTATTTCATGGACACGTGCTTAGAAAACTCTTTCCCCAATGCAATGCTTGTGGAAAGCCAAGAATCATGTGGTGAACCTAAAGGAACCTGTGAAGAATCTGTTATTGAGGGTGGTGAATATGCAATGAATGAATCAGTACATGGCAAGAGACAGTTTGATTCACCTGTCAAATCAGGTGTGGCAGTGGAAAAAAACAGTTCTGTCCAGACACCAGTTTCTAAAGCCATGTTGAACAATTCAGTGGACAGCATTGCTGACAATGTTGAATTGGAAAGCTTGCTAGATGGAGTAGAGTGGTCACCCCTGGTTACTTTCCTTGATCATCAACATATTGTTGGTCAAAAGAGCACGAAGACTAACAAAACTCTCTTTCCTCCTGACAAGAATACTGAAGAAGCAGAATTAATATCCAAGGAACTTGAAACAAAATGCAATCTAACTAGGGCTCAAGGCTACTTTCGCTTTCTGGTACTGGAGGTATCACGCAGAGAGCTTGTGGATGAACAAGCTGTGACAAAGTATGGAAGGTGTTTATCTGAAAAAATGCTTCGCCTATTTGATGAAACTGTCGGCGAAGAAAAGTTTTGCAGTTTACGAGAAGAGTGGGAAGCTAGTGAAGTTGAACCTGGTGACATTGTGCATATAACAGGGACATTTGACTCAGAGGCAGGATTGTGCATCCTTGACAACTCTGCAGATCATTACTTGGTCATCCATCCAGATACCCTAGTATCTGGAACCACTGTGTCCATGGCAACAAAGTGTTTGCGACAGAGTGTTCTCAATGAGCGATTTCGCACTGACGACCAGAGTGAAGTCATGCTGATTGGGACACTTTTGCATGATTTATTTGACTTGGCAATGGAGTTTCATGAATTCTCACCTGATGCCCTTTTGGAAAGAACCCATGGACTCCTAAACAAGCTCTCTTATCTAGACCACTTGTACAGCTTGGGACAGACAGAAAATTGGGCTCTAGAAAAAGTCAAAGAGCACATCCCACTGCTGTGTGACTGGGCCAAGAACTTTGTGGCCCCTTTTCCACATCCTGATCAGGGGACCATGGAGTTTAAGACCCCAGAGTACCAGCATGTCACAGAGCAACCCAGTGTTTGCATCTCATCTCTGAGGGACATTGAAGAGAACATATGGTCACCAAGATATGGACTGAAGGGTAAAGTGGATGCTACTGTTGAGGTAAGAATCGACAGAAGACCGAAAATAAGACGTCACAGGCCTGATACAAGAAACCAGGTGAAGACCACAGTGCTGCCGCTGGAGTTGAAAACAGGAAAAATGTTCACCAAACTCGGTTCAATTGAACACAGAGCACAAGTGATCCTATACACGCTGCTTATGTCCGATCGCTATACTCAAGCGGTTGACGCTGGCTTACTGTTTTACCTTAAGTCTTCTCACATGATCAGTGTACCGAGTTTTCTTCATGAGAAGAGAGCGTTGATCATGAAAAGGAATGAAGTTGCGCGCTACTTGACGCTCAACAGGGCTGGAACCACAGGCGTTATGCCAGCCATGTTAAAGGAACTTAACACCTGTCGTCGTTGCCCTCAAGCTCAGAATTGCACCATTTTCCATAAAGCGGCTGAACAAGGAGATGGTGTGTCAAGTGGTCTAGGTCCATTCTTCAACGAGACAACGGATCACATGACAAAGGCTCACGCAACTTTCTTCACCACCTGGTATAAACTGGTTTGTTTGGAAGGGAAGGAGATGGAAGAAAAGAGAAACCAACGAGAGATATGGTGTTTGGATGGGTGGGAAAGAGAAAAACTGGGACGCTGTTTCAGTGGTATGGTGTTGAAGTCACAGGAAGACCACGTTGATTCTTTAGGCAGCAGACAGTATTACAGACACAGGTTTGAAAGGACAGAAGATCATCCCAGTGAGACACCTCTGCAAGAGGTACCCATCACAGTTGGAGAGCGAGTGATTTTGAGCGATGAGAGCAAAGGAGCTGTAGCTCTTGCAGCAGGTTATATTCACGAGGTAAAAAAGAAGGAAGTTGTTGTTTTATTAGACCGCGATTTAACAAAGAGGTATGACACCCAAACGGAAGACACAAGCCCAGGTATTTATCGCTTGGACAAGGACGAAGAGTATAGCACGTTGGCAACCCTGTGGTCCAATGTGGCCAAACTATTCAAGGGAGACTCCGACAGGGATGCTCAACTACGACGACAAATTATCGATTTGGAGCCACCAGTGTTTTCGAGGAAACGAACAAACGATACTGTGGTCACGTGGAGCCAAACATCGGAAATCGCCGAGTATTTCACGCAGGAATCTGCTTCTCAAAACAGGAGTCAGGCAACTCCTGATCCTGCTAAAGAAGCTATTGTAAAGGAACTCAATTCTGACCAACGCAAAGCGATATTCAAAGCGTTGTGCGCGCATCATTATGCTCTGATCCTTGGTATGCCTGGTACTGGTAAAACTACTACCATCTCTTGCCTGGTCCGTTTGTTGGTGGCCTGTGGCAAGTCTGTTTTACTCACCAGTTATACTCACACCGCCGTGGATAACATTCTACTGAAGCTTAAAGAGGCAAATGTTGATTTCCTTCGCCTTGGACAAGTTCACAAAATTCTTCCAGAATTGCATTCACACTCTTCACAGATGGCGGCTGCTGATATAAAAACTGTTGATGCCCTGAGACAGCTGTACGAATCCAAGTCTGTTGTGGCGACCACGTGTTTAGGAGTAAACCACGCCCTGTTTTCGCATCGAATGTTTGATTACTGCATTGTGGATGAGGCTTCTCAGATCACACAGCCTGTCTGTATTGGACCTCTCAGAAGATCTCGAGTGTTCATCTTAGTGGGAGATCATTATCAGCTACCTCCTCTTGTTCAAAGCGTGGAGGCCAGGGAGGGAGGGATGGACGTGAGTTTGTTCAAGCGCCTATCCGAGCAGCATCCTCATGCAGTTGTCAGCCTTGAGCATCAGTATCGAATGAACCAGGACATTATGGAGCTCTCCAACACCCTCATCTACGAGAACAGACTCAAATGCGAGACGCTGGAAGTGGCTCGGGCTCAATTGCAGTTACCTAACTGGGACGAGTTGGTCAGTTTTGTCAACGAAACCACTTCAAATGCTACAGATACCTGGATTTTGAACGCACTAGTGCCAAGTCGCCCAGTCGTGTTTTTGGACACTGACGAGGTTCCCGCACCGGAAACTCGGTCCGACCATTTGGTATCCAATGAAATTGAGGCCTCGATAGTTCATCAACTGGCCTGTGGTCTCTTAAGAGGAGGACTGGAACCGTCCTTATTGGGAATTATCTCACCTTACAGGCACCAACTCAAACTGATATCGCAAGTGTTCCAGAGGGTAGCCAACACCAAACACAACGAAATTGAAATAAACACTGTGGACAAATATCAAGGGCGCGACAAGTCTTGTATTATTGCGTCATTAGTTCGTAGTAACGAGTATTGTAATGTGGGAGATTTGCTAAGGGACTGGCGCCGGGTCAACGTGGCGGTGACGCGTGCGAAGAGAAAATTGATTCTGATTGGTTCGTTAAGCACACTTAAAGGCAGCTTGCTACTGCGGGAGCTTTTTGACCTGCTGGAGCAAAGGGACTGGATACAAGTTCTTCCTCGTGATGCGCACAAACTGTGCGAGTTTGTTGGAAAGTCGTCCCAAGCTTCACCGTGCAAAAGCACTGGGACACCGAGATACGCTTTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QHA5	DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis OX=8355 GN=dna2 PE=1 SV=1
D3ZG52	DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus norvegicus OX=10116 GN=Dna2 PE=3 SV=1
E1BMP7	DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus OX=9913 GN=DNA2 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF21123 all species →	Dna2_Rift	Dna2 Rift barrel domain	Domain	Interproscan
PF08696 all species →	Dna2	DNA replication factor Dna2	Family	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR048459 all species →	Domain	DNA2, rift barrel domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR026851 all species →	Domain	DNA replication ATP-dependent helicase/nuclease Dna2/JHS1, DEXXQ-box helicase domain	Interproscan
IPR014808 all species →	Domain	DNA replication factor Dna2, N-terminal	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0071932 all species →	Biological Process	replication fork reversal	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10742	DNA2; DNA replication ATP-dependent helicase/nuclease Dna2	EC:5.6.2.3 EC:3.1.-.-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074636770.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

13TPM > 0

2Conditions

2.0Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	9	0.24	2.03
all_coral_tissue · baseline	38	4	0.13	1.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.03
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.56
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.46
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.27
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.25
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.00
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.90
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.88
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.78
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.95
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.19
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.83
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.81
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.