Gene detail

Detailed information of XP_074636795.1 in Acropora palmata

Genomic Location: NC_133891.1:5213020...5235817
NR annotation: XP_029192707.2, Fanconi anemia group J protein homolog [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074636795.1

ATGGCTGAGCATGAGAGCGACAAGAGTCGATTTGTGTACACTATCAACGGCGTGAAAGTTGTCTTTCCTTGCAAAGCTTATCCCACGCAATTGTCAATGATGAACATGATCATTAAAGGAATTGAGAGGCGTCAAAATTCTCTTTTGGAGAGTCCCACAGGAAGTGGGAAGAGCTTGGCATTACTTTGTTCTTGTTTGGCATGGCAGTCTGCAGAATATGAAAAGAAAGAAAAACTTGAAAGAGAAGAAAATGCTGCTGAGGCTTTGGAAACCAATGGATTTTGTGATAATGCTTGTGGTGCTGACGAGTTATCTCCCCAAACTGGCTTTCACATGAATTCCAAAAGTGAATATTTTCAACACAATACCAGCGAAACAGCAAAAAATAATACAGAATTACACAAAAGTGACAATAATACTGAAAAAGTCTCTTCTCCACCACAGTCTTCAGATGAAAGTGAATCCCACGTTGGAAATTTTGCCTCAGGGAGCCTTTCTGATGACGATTTTCAGCCAGCTAAGAAACGTTTAAGAACTCCAGGAAATCAAGCAGCTCCGTCAAAAAAGAGGCGTGTCCAGACGTCCTTGGAATCAAGCTCCTGTGAAGATGAGTCAAATCCTGAGCCTCCAGAAACAACAACAGATACTACAACAGGGGAAAATATTTCTCGTAATTCCAAAGACTCTATGGAAAATAAGGAGAAGTGTTGTACTGACAGTGGAGGCAAGATCAAATCAGCAAAAATAAAGGTTCCGAAGATCTTTTTTGGAACTCGAACACACAAGCAAATAGCACAGATTTCAAGAGAGCTTTGGAAGACTGAGTACAAGAAAGTGGGGATGACTATTTTGTCCAGTCGAGAGCACTCCTGTGTTCACCCAACAGTTTCAAAGGGAAAAAACAAGAATGAGGAGTGTAGAATACTCCTGGATGGAACAGCGGGTCCAGGTGAAACCTGTAAGTATTACCAGAAAGTCAACACCATCAAAACACAAACTAGTTTGAAATACCATGGACTCACTGATGCCTGGGATGTAGAAGACTTGGTCACCCTTGGAAATCAAATAAGAGCCTGCCCATATTATGCTGCAAGAGAACTGATGAAAGAAGCTGACATAATATTCTGTCCATATAACTATCTAATTGATCCTAAAATAAGAATGCAGATGGAGATAGATCTCCGAGATCAGTTGATAGTGCTAGATGAAGCACATAATGTTGAGGACTCAGCTCGTGATGCAGCCAGCCTTACTCTAACAGCTGTGGACTTACAGAATGTTCTTGAAGACCTTGATAAATTAGTTCAAAAGCAGGTGTTGACAGAGAACCACAGAGCACTTCATGTCATGACTGGGAGCTTTTTGCGGTGGATTCATGAAAGCTCCTCTCAGTTGAAAGAGCGAGGCTTTGAGCAGTCATCTAAAGTCTGGTCTGGCATGGAAATTATAGAAGTAATGGAGAAACAAGGGATTACATCTGGAACTTTTCTTCTCTATTTTGAGCATTTTCAGTTTGTTATGGCATCTGCAAAAGATCCAAAGAGACAGGGTATGCCTTCACTTTCAACTCACAGCACCACTCTCTTGGAAGGAATATTTCTGATTGGAAAATATATGATGGGGTACAACATGAAGTATATCTCTGACTACAGGTGTGCTGTGCTCCAAACATCTGTTATGGTTAGAAATACCCAGGTCATGCCTGGGGGATGGAGAAGATCACATGGAGGTATGAGGAAGGAATGGACACATTCTTTGAATTTCTGGTGTTTGAACCCCGCTGTGGTTTTTTCTGAGCTTGGTTCTGAGGCACGCTGTATTATCCTCACCTCTGGAACTCTCTCACCAATGGCATCCTTTTCATCAGAGCTTGGGGTGAAATTTCCAATCCATTTGGAAGCTAAGCATGTCGTTGCCAGTTCACAGGTTTGGGTTGGAACATTAGCTTCAGGGCCAAGTGGATCTGCTGTTAATGCTAGCTATCAAAGTTCTGAGACATTTACCTTTCAAGATGAAGTAGGAAAGGCAGTACTCAACATTTGTGAAACAGTTCCTCATGGCGTTCTCTGTTTCTTTCCATCATACAACATGCTGGACAAACTCAGCAAACGTTGGCAGTTAACAGGTTTGTGGTCCAAGCTCTTGGACAAAAAGAAAATTGTCAGTGAACCAAGAGGCGGTGACAAATTAGAATTTGATGACATAATGCACCAGTTCTATGATGCTGTGAGAACTAGTGAAGATGAGGAATGCACAGATTCAGATTCAGATGTTGAATCATCTGTCGACGGTGGCTTGTTCCTGGCGGTTTGCAGAGGAAAAGTCAGTGAAGGGCTCGATTTTGCTGATAACAATGCCAGAGCAGTCATCACAATTGGCATTCCCTTCCCTAATGTAAAGGACGTACAGGTGGAACTTAAACGCAAATACAACACCCATTATGCAGCCAGCAGAGGCCTTTTAACAGGCAGTGAGTGGTACGAGATTCAGGCCTACAGAGCTCTGAACCAGGCTTTGGGTAGATGCATTCGTCACAAGCAAGACTGGGGTGCCATTCTGCTGATAGACGAACGATTCAACAAGTCTTCAAAGTATACAAATGGGATATCTAAGTGGGTACGAAAACGAATCATCAAATACGATGACTTTGGCGAGGCAATGACCTCGTTGAAACAATTCACGACCGCTCGTAAATTAGATCCTTGTCCCACACCCGTCGTGGCCTCACAAAGCTTGCTGTGTGCTAGCACTCTGGAGACTCCAACGAAGGAAACGAACTTGAACTTTGATAGGAATTTATCCATGGATTCTACTCCGCTTAGTGAAGTCCCACGTAGTCATAATGCAGGATTCACACCTGGACACTGTGTCAACGGTGATCTGTTAAAGAGGGTTGGTGTAGACACACCAGCCAAACCAATCAATGTCCACACCGATGCAAAACCTTCTCTGGAGAGCTCTTCGTTGTGCAAAATCCAACTTAGTGAAAACTCATTGCCTGTGTTGACACTTCAGTCTTTAGCAAACGCTGAACGACTCGATGAAATCACAGAAATAAGAGTCGCCGATGGGTCATTTGTTAAGCAAGAAGCAAATGCAAATTCCTCAGTAAAAGTGAAGCAAAGCGCTGACACTGACGCTATGAGGATTCAGCAACCACAACTAAAAGAAGTCCCGGATAACCAAAGTTGCATTGCTCCTCACTCTCCGAGGATTGATATCATTTGTGCAGATGGCACCCCTAAGAATCAGAAATTCGTCAATTCTCATAGGAAGAGCTTAGAGCAAGGAACACAAGAGAGAAAGGTGTTTAATGGAAGGACGTTGGTTCTGGACTGTAGTCAGAAAAATGGACTTAGCTTAGATAAAGGCAAATTCAGAAAACCGTTCAAACCTCCCGAAAACCGTGAGAGCACAGTGTTAAACTGCACCAAAACAAAGAACTCTGAAGGTGAAGGATTCTTGGAAGAGCAATGCTGTTCTTCTCCTGAGTTGTTTGCCACTCCGAGCACATCACCAATATCATCTCCCAGTAAACAGGGAGATAAAGAACTTGCAATCTCAGAGAGTGAAGACAGAACTTGTGCAAAACTGGAAAGCATTAATCTTGCTTGTCGCGAACCAAGTAAGATTGAGAGCACCGAAAACCAGGCGGTAAATGCGGGAAGGGACTATGAATATGAGGGAGAGGACAAAAAAAGTGAACGTTTTGTAAAGCAAGATATGGTTGAAAATTCTGTTACAACCGACACAAACAATGAAACTGTCCCACCTGAAAGAAACCTTCATTTCAGGTCTAAAGTAACGCTCTGCAGCAACGCTCTACAGCAACGCGACTTCCTCGATGACGTCAATGATGACTTTGCTGAGAAAGGTAGTGAGATAAAAGTTGAATGTGATCCTAAACTCCTGGAGGTTTCTTCAAAAAGGGTTGAAAGCTCGTGTGGAAGCGTCTCTAAAGAGTCAAGCAATGAGCCGCGAAATAGAAGGAGAAGCATGAGGCTTCGAAAGAAATCAAATACCGCGAGAACATCTTCGAAGACACGCGAAGAAAACAACGAGGAAAAGACAGACGTAGATGGTGACAGAGCTCTTTTATTTTGTACCCACTGTGGGGCTGGCCTTGTCAAAGGTAGCGTCACGCCCAAGCCTTTTCCAAAGGATACCCCTGACGAAATACTGCAAGCTGTTAACGGCAAAAAAATTCTTATGATTGATAGAGATGATAGCGAAGTGTTGAATCTGTGTCCTTGGTTTGCCGCGGAAACGAGTCATAGCTCAGGTCTAAAACTAAACAGCCTCTTTGTGCCGAAAACCGACACTTGTTACATCCCTCAAGTTTGTAAAAGGTGTCACTCAACTAGCAAAGATTCGCCGATGGTGGGCTTTGAGTTTGTGTCATTTGGGTCATCTTCCCAAGTTAAACAGATCTGGCTGTTTCCTAGTGTTGTTTACGTCGGCAACCACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A8J1M587	Fanconi anemia group J protein homolog OS=Xenopus laevis OX=8355 GN=brip1.L PE=3 SV=2
Q5SXJ3	Fanconi anemia group J protein homolog OS=Mus musculus OX=10090 GN=Brip1 PE=2 SV=1
Q9BX63	Fanconi anemia group J protein OS=Homo sapiens OX=9606 GN=BRIP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001317 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06733 all species →	DEAD_2	DEAD_2	Family	Interproscan
PF13307 all species →	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006555 all species →	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR010614 all species →	Domain	RAD3-like helicase, DEAD	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR006554 all species →	Domain	Helicase-like, DEXD box c2 type	Interproscan
IPR014013 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan
IPR013020 all species →	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:1990918 all species →	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15362	BRIP1, BACH1, FANCJ; fanconi anemia group J protein	EC:5.6.2.3	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074636795.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

63TPM > 0

2Conditions

23.7Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	33	7.96	19.53
all_coral_tissue · baseline	38	30	10.94	23.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.53
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.42
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.96
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.53
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.11
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.65
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.09
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.24
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.74
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.54
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.89
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.67
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.53
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.33
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.10
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.47
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.88
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.43
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.91
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.81
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.24
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.92
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.63
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.33
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.10
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.40
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.21
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.66
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.24
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.15
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.58
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.25
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.80
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.73
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.28
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.05
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.73
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.91
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.45
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.34
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.03
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.96
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.24
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.03
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.95
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.72
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.33
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.94
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.82
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.61
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.58
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.94
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.41
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.40
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.66
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.13
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.73
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.12
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.63
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.09
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.79
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.90
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.30
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.