Detailed information of XP_074637293.1 in Acropora palmata

Genomic Location: NC_133891.1:396434...437230
NR annotation: XP_029212498.2, laminin subunit alpha-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q00174Laminin subunit alpha OS=Drosophila melanogaster OX=7227 GN=LanA PE=1 SV=2
Q61789Laminin subunit alpha-3 OS=Mus musculus OX=10090 GN=Lama3 PE=1 SV=4
O15230Laminin subunit alpha-5 OS=Homo sapiens OX=9606 GN=LAMA5 PE=1 SV=8
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002106 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00054
all species →
Laminin_G_1Laminin G domainDomainInterproscan
PF00052
all species →
Laminin_BLaminin B (Domain IV)DomainInterproscan
PF02210
all species →
Laminin_G_2Laminin G domainDomainInterproscan
PF00055
all species →
Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF00053
all species →
Laminin_EGFLaminin EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002049
all species →
DomainLaminin-type EGF domainInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001791
all species →
DomainLaminin G domainInterproscan
IPR050440
all species →
FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR000034
all species →
DomainLaminin IVInterproscan
IPR008211
all species →
DomainLaminin, N-terminalInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →
NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009887
all species →
Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →
Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06240LAMA3_5; laminin, alpha 3/5-Toxoplasmosisko05145deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074637293.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
73TPM > 0
2Conditions
28.4Max TPM
8.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 40 7.00 28.41
all_coral_tissue · baseline 38 33 10.00 22.16

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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