Gene detail

Detailed information of XP_074637460.1 in Acropora palmata

Genomic Location: NC_133891.1:856808...860107
NR annotation: XP_015754982.1, PREDICTED: 40S ribosomal protein S20-like [Acropora digitifera]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBH8	Small ribosomal subunit protein uS10 OS=Bos taurus OX=9913 GN=RPS20 PE=1 SV=1
P60866	Small ribosomal subunit protein uS10 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1
Q4R5D0	Small ribosomal subunit protein uS10 OS=Macaca fascicularis OX=9541 GN=RPS20 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009063 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00338 all species →	Ribosomal_S10	Ribosomal protein S10p/S20e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036838 all species →	Homologous_superfamily	Small ribosomal subunit protein uS10 domain superfamily	Interproscan
IPR027486 all species →	Domain	Small ribosomal subunit protein uS10 domain	Interproscan
IPR001848 all species →	Family	Small ribosomal subunit protein uS10	Interproscan
IPR005729 all species →	Family	Small ribosomal subunit protein uS10, eukaryotic/archaeal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11700 all species →	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02969	RP-S20e, RPS20; small subunit ribosomal protein S20e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.