Gene detail

Detailed information of XP_074637464.1 in Acropora palmata

Genomic Location: NC_133891.1:285609...296591
NR annotation: XP_015754946.1, PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like [Acropora digitifera]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074637464.1

ATGGCAGCTGTAACCGTTGGAATTTTATCTCTGCTATTTTTGTTTGTGATAGCTTTCTCTTTGCAAGTAGATGCATGTTCACAAAATTCGGTCAAAGACTCAACCTGGCAAGACCGCTTGGTGGATTGGTGGCTGTCTGTAAGAAAATTTGGAGCGAGTCTTGTTATTGGTGGAATGGGTTTGTCTTGGCTGATAGTCAAGTTACAAGGGAAACAAACTGTTAATAATAAAGAAGTTGGAGAGGAAAAATTAGGGAAGTCAACAAGATACCATAAGCTCATTATCAAAGCCAAATATGATGAGGCTTATGTGAAAGAGAGCAAAATACAAAAGTACTCAGTAATGGAAACAGCCAAGTTTGATGGACTGAAGATCTTCTTTGGCTCACAAACAGGAAAGGCTAAGAGCCTAGCACATTCACTGCAAGTTGAAGCAGAGAAGATGGGACTGGGAAGTGAAGTAGTGGATTTAAAGAATTATGAACCAGAAGATAGTCTCTCTGAAGAGGCAAATATATGTGCATTTATTGTTAGCACATATGTTGATGGAAATCCTCCTGAGAGTGCAAAGTGGTTTTATAAATGGCTGGATGAGGCGTCCAGTGATTTCCGTGTACAAAAGTCGTTGCTGAAGGATTTGAATTATGCTGTATTTGGCCTGGGGGATTCTCTTTACGAAGACAATTTTAATCTGGTTGGGAGAAACGTCGATAAAAGACTTGAGATTTTGAGTGCAAGAAAACTATTTCCTCTGGGTGTTGGAGATGAAAATTTGGCAAACAGCAAACATGGAGGCACTGAAAATGACTTCAAGTTTTGGAGTACAAAATTCCTCTCACATGCTAAAAGAATGATGGAGAAAGGCTACCATCCTTCTATTGAAAAATGTTCTCAAGAGTTGTGTTGTCAAAATCAGAGAGATCCAGCAGAGGAAAAGGAAATTCAAGCAGATGAGGTTTTATATGAGACTACCAGTGAAGAGTCATCTGAAGAGGACAATGAACAAGGAAAGAAGAATGGCTTGTTAGATTTAGAGGAGTTGGGTCCTTTGATGAAATCTATGAAAAAAGCAAAGAAAAAAAAGGAAGGGGTACAAGTCAATGAGAGAAAGAGAGTTTTAGGCAAAAAGCAAATCACAGAACCTAAGGAGATGATAAGCCCACTCCTGGAGAAAGCTTTAACAAAGCAAGGCTATCGTTTAATTGGCACCCACTCGGGGGTTAAACTTTGCAGATGGACAAAGTCGATGTTAAGAGGTCGTGGTGGCTGTTATAAACATACGTTTTATGGGATTGAAAGCCACCGCTGTATGGAAACCACACCCAGTTTGGCCTGCGCCAATAAATGTGTCTTCTGCTGGAGACACCACACAAATCCTGTTGGAACAGAATGGAAATGGAAGATGGATGATCCAGACACTATTGTCAATGGTGCGATGGAAAATCACAGAAATATGATAAAGCAGTTTAGAGGTGTTCCTGGTGTTAAAACAGAACGATTTGAAGAAGGAATGAAGATAAGACATTGTGCACTCTCCCTTGTTGGTGAGCCAATCATGTACCCAAGGATTAATGAGTTGATTAAAATTCTCCATGGACATGAAATATCTTCATTTCTGGTAACAAATGCTCAGTTTCCAGATGCTATAAGGAATCTCACCCCAGTCACTCAGTTGTATGTGAGCGTGGACGCAAGCACAAAAGAAAGTCTCAAGAAGATTGACAGACCACTTTTCAGAGATTTCTGGTCACGGTTTCTGGATAGTCTAAAGGCTCTATCAGAGAAGGGTCAGAGAACAGTATACCGTCTAACTTTGGTAAAGTCATGGAACAATGAAGAACTACAAAACTATGCCGATTTGGTGTCCATTGGAAAACCAGACTTCATTGAAGTAAAGGGTGTTACATATTGTGGGGAATCGAAAGCCTCAACTTTGACGATGGAAAATGTACCTTGGCATGAGGAGGTTATAGGCTTTGTTCAACAGCTTGTTGATTTACTTCCTGATTACGAGATTGCATGTGAACACGAGCATTCTAACTGTCTTCTCGTTGCTCAAAAGAAGTTCAAGAAGAGTGATGGATGGTACACCTGGATCGACTATCCTACATTTCATCAACTGATGCGTAGATACGAGGAAAGCGACGGAACCGAAGACTTTTCCGCTCTGGACTACATGGCAAAGACTCCTGATTGGGCCTTAATGGGGCATGCGCAAAGAGGTTTTGATCCCCTAGAAACTCGCTGGCATCGCAAAAAGAGAAAGGATATCAGCGGATGCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KHP8	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Xenopus laevis OX=8355 GN=tyw1 PE=2 SV=1
Q5REF9	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Pongo abelii OX=9601 GN=TYW1 PE=2 SV=1
Q9NV66	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Homo sapiens OX=9606 GN=TYW1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004277 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF08608 all species →	Wyosine_form	Wyosine base formation	Family	Interproscan
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR034556 all species →	Family	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR013917 all species →	Domain	tRNA wybutosine-synthesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13930 all species →	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0031591 all species →	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15449	TYW1; tRNA wybutosine-synthesizing protein 1	EC:4.1.3.44	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.