Gene detail

Detailed information of XP_074637809.1 in Acropora palmata

Genomic Location: NC_133892.1:14790831...14868849
NR annotation: XP_029210262.2, sodium/hydrogen exchanger 10-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074637809.1

ATGACTTTTCATAATTCTACAATATCGAGTGAGGTTCATGATAGCAAGCCGTACGCCATTTTATTCATATTTACTGCATGTACAATAGGAGCTATAGTTCGGCAGGTTATGAAGGGATGGCCAATTCCTTACACCGTCGTTTTAATTGTCGTTGGTCTTGCTGTTGGAGCATTATCTGGCTCAGTTACAGCTGTTCAAAGGTATACCTCCTTGTCAAGCCAAAATCCTCACCTTATTCTCACAACATTTTTGCCAGTTCTTCTATTTGAATCAGCCTTTGCTATGGACGTCCATATATTTTACAAGATGTTCTGGCAGGTCGTTTTGCTTGCAGTCTTTGGTTTGGCAGTGGCCACAGCTCTGTCTGGTGTAATGGCAAAAATGGTCTTTTTTTATTATCATTGGACCTGGTTTGAAGCATTGCTCTTTGGCTCAATAGTCAGCGCTACGGATCCAGTGGCTGTAGTGGCTTTGCTTAACGACCTAGGAACAAGCAAACAGCTATCTACCATCATTGAGGGCGAATCGTTGTTGAACGATGGTATGGCAATTGTGCTCTACAAGATATTTTTCAACTTGGCGTTTTCTACAATGACTGCCACGGAGATAGGGTTGTACTTTCCTCAAGTGGCTCTTGGAGGATTCTTTTTTGGTCTAATAGCTGGAAGAGTCACTGTGTTTTGGCTACAGCATGTTTTCAATGACGCTTTGGTAGAAATCAGCATCACCTTAGCAAGTGCTTACCTCACATTCTATATTGGAGAGGAGGTATTGGGGATTTCGGGAGTCATTGCTGTTGTGATGCTTGGGATACAAATCAACGCTCTCAAAACAAGCATCAGCCCAGAGGTGGAGGTTTTCCTGCACCGGTTCTGGGAAATGTTAGCCTATCTGGCCAATACACTGATATTCATAATGGTTGGCGTTGTTATCATGGAAAAAGCGCTGAACAGTTTAGACGAGTACGACTTGTTCCTGTTGGTGGTGGGCTACTTTGGCATTACGGTGATAAGGGGTTTAGTAATGATGGCATTCAGTCCCATTTTGATGCGTATTGGATACGGTTTGTCATGGCAGAATGCTGTGGTGACGGCCTGGGGAGGATTGCGGGGCGCAGTAGGCCTTGCTCTTGCACTGCAGGTCTATATCGATCAGCCTCTCATTGGTGGAAAGGTATTGGCACACACAGCTGGCATTGTGATGTTTACACTTCTGGTTAATGCCACAACGATGAAAAAGCTGCTTGAGAAACTCGGAATGAGTGATATATCAGACTCCAAGAAAATCTCTATGGCGAATGCTGTGCGGCAGATACAAGAGAGCAATCAACGCACATTAACAATGCTGAAAGCAGATCGCTTCTTGGCTGACGCAGACTGGGATATGGCGGAGAGAGATTGCGAAGTCCATAATCCCTACATGGAAGTTGAAGAAGGGGAGCACGCAGAAGAAACTCCACTGCTTGTTCGCCTGAGCACTTGTCCAAACTGTGAAACCAGTGTTCCTAACGAACCATCTCCAAAAGAATTTGCAGAGATGGCGAACGATGGCAGAGTTCGTTTGATAAAGGCTCTGAAAGTAAGCTACTGGAAACAGTTTGAGCATGGTATGCTGTCCCGTGAGGCAGTGCAGGCCTTGATTAATCTGGCTGATACCGCCATGGACGAGGAAGAAAGTTTTATTGAAATGGATGATTTGAAGCCCTACTGGAGAGTGCCACCAATCCTTGAAAAAGTCAAAGACAAGCTGGAACAGTTGAAGCATCAAAAACCAGCGGAACGCATCCCTCCACCTACGATCAGGGTTCTATCTTTCATGTACACGGTGGCTGTGCATGTTTCGTTTGACATTGTCATGAATGTTTTAATCATTATCAATATGGTGCCGATTATTCTGGAATTGGCTTCTGACGACGATGCTCCGTTTATGCCCATCTTAAACAAAATCAACTATTTTTACTGCTCTTTGTACGTCACTGAAGCAATTTGGAAGATGATGGCATTTAGACGTTACTACTTCAAAGACTACTGGAACCTATTAGATTTGTTTATAGTGATCTTGTCTATAGTCGACATAGTGATTGACCTATCAGTTGACAAGGCTACAGGTGGATTCTCTCCATCTATCCTTAAGGTGGCCAAGGTTTTCAGAGTGTTGCGAATGGGCCGTGTGCTCAGACTGTTCAAAACTGTTCTTCCAAAAGTGATAGATTTCGTTAACGACATCATCAATCATCAGTTAAGCTTTGGATATGACGTCGGTAAAGGCTACATCATCGCCGAAGAAGAAGTTATTAAACTCATTGATCACATGGTAGTGGACAAAAGAATTGCAAGAGACTTGAAGCAGAGATCCGAACAGAATCGTTTAAACGTTGTCAGAAGCTTAGGCATGCTGCAAAGAGAGCATCCCGGAATAGCCATCTCAGTGAAGACGCGGCAAGCAATTCGTACCATACTTAACAACGCCCGTGACGTCATTCACGAGCTCAAAGGGGGCGGCTTGTTAGACGAGGCAGAAGCCGCAAAACTTGAATCGATCGTTGAAGTGAAAATGAAACAGCAATTAAGCACTCCAGCATCTCTTCCACCTCAGAAACCTTTAGAGTTGCTTCGCAATGTGATTTGGTTGGAAGGAATGTCTGCAGAGGCAGTCGACTTCATCACATCAGCAGCACGCATCAAGCTGTTTGAGGTTGGTGATACTATCACAAGGCAGGGTGAAGATGCTACAGGGATATACCTCATTGTGTCGGGAATGGTTAAGATGGTTGGTGTATCGGTGAGAAAAAAGAGTTTGGAGGAGAACGAGGAACCGGAAGTTGGAGAGATGATTGTGACCAAAGACTACATTTCTGCTGGGAACTTGATTGGAGAATTGGCAATGCTCACTTCAGCGAGGAGAAACTCGTCCTGCACTTGCGAGTCTGAGGTCCAGGCATTTTTTATCCCAAGAGAAGACATGACAGAAGCCATGGATCGCTTTCCTGACCTGGTGAACAATCTATGGAGAGTTTGCGGTGTGCGATTGGCTGTGCCACTCCTCTTGGAGGTGCCAACTTACTACAACTGGACAAAAGACAAAATTCGTATCATGTGTGAACGATCTCACATCGCAGCTCTTCCCAAGCCTCCAAATGTGGTATTTAAGATTGCTGACTACATGAGAGAGGCTATACTTGTTCAAGGTAAGGTTACGGAGGCCGCTACAGAAATCATTTACGAAGCACCTTGTGTTCTGCCAAAAAATCATCGACTATTCAAACTACATTTCGAAGTGGAGGAGCCCAAGATTTTAGTCATCACCCGTTCACACGAAAGTGCAATGCCCGACGATCCAGAGGATAACCCTTCAGTGCTGGATTTTGTTGGAATTCACGCTCGCGGACGCGATTCATGGATCAGGAGAGAAACCGTCCATGGAGTAGATTCTGGTTCAGAAACAGTATTCAGAGGGAGACAAAAAGGGTCGAATAGATGGGAAGGGAGTTACCGAAAGCTTGATCCAGTACAAGACAGGTTACAGGGCAGAAAGATCACAGTCTCACCCAAGAAAGAGGACGAGAAAGAACACTTGACAATTGGTTATGATGCTGTGGAGCATCCTGTTATTCACAGACTTTGGAATCAACAGAACCATCATGATGCCGTCCCATCGTTACAAAAAGTGCTACGTTCAGTTGAAGACGACGAACAGGAAGACTTAAAAGTTAGAGACATTAAATCAGCCCTGACGTCCATAGAAAGAGAAACAGAATACCACGAAAATAGAAAACGGACAAAGATTGCAAGAGTGTTAGCCTCTGTCGAAGAACACACCAATCAAGCGCTGGCACAGAATTCCACTAGCACTGAAGAGGGCGACGAGAGAAATTCAGATGAAGCAGAAATATCCCTGCCCGATACTGGCATCAGGAACCGTGAGGGACGCACACTTCACCTCAAAACAAACAATGGAAACAAACGCGTGTTTATCCCAAGAGGATGGATGTTTTGTACCATTCAGCCACCTAAGTGCTTCTCGAAGAAAAAGAGGGACATCAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3RL54	Sperm-specific sodium:proton exchanger OS=Strongylocentrotus purpuratus OX=7668 GN=SLC9C1 PE=1 SV=1
Q6UJY2	Solute carrier family 9 member C1 OS=Mus musculus OX=10090 GN=Slc9c1 PE=1 SV=3
Q4G0N8	Solute carrier family 9 member C1 OS=Homo sapiens OX=9606 GN=SLC9C1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004272 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00999 all species →	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006153 all species →	Domain	Cation/H+ exchanger	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018422 all species →	Family	Cation/H+ exchanger, CPA1 family	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10110 all species →	SODIUM/HYDROGEN EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015385 all species →	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0015386 all species →	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719 all species →	Biological Process	sodium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14726	SLC9A10_11; solute carrier family 9 (sodium/hydrogen exchanger), member 10/11	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074637809.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

53TPM > 0

2Conditions

2.5Max TPM

0.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	26	0.06	0.49
all_coral_tissue · baseline	38	27	0.19	2.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.49
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.39
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.28
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.16
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.14
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.12
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.12
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.11
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.09
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.09
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.07
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.05
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.05
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.05
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.05
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.05
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.04
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.04
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.04
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.04
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.03
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.03
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.02
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.01
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.01
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.01
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.48
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.95
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.94
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.39
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.29
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.26
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.22
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.22
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.21
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.21
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.19
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.18
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.13
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.12
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.10
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.10
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.07
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.06
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.06
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.05
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.04
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.04
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.03
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.03
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.02
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.01
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.01
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.