Gene detail

Detailed information of XP_074637985.1 in Acropora palmata

Genomic Location: NC_133892.1:667019...687804
NR annotation: XP_029193034.2, myosin-3-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074637985.1

ATGAATGATTTTGAAAGACTTCGCAAAGAGAATACGGTCCTCCGTAGCGAATTGGCCCAGTTGAGGGACGAAATATCCATTGAGAGACAAACACACGAGCAGATAATTAAAAGTTTCCAAGCTGGTCACAACGACGATACTAGGAAACTTAGAGAAGAGAAGAAAGTCACCTCAAAATTAGCAGAAGAAAATGGCGACTTGCGTTTAGAGTTGGAGGAAGCTCGGAAACGTTTGTCAACTCGAGATAATGAAACATTCAAACTGCAAGAAGCCGATCTTAGCGCTCGTTTGCTAATGGAGTTAACGGCTTTGGGACAAAGGCTAGGGTCATTACACGGTGATTTAATGTCTAGTTCCGTAGCAAAAAGCTTACACGAAAGACAGTCTACATGTCATGATGCATCAGCCACCAGGGAGTTATTTACAAAGCTCAGTGCTGAATTGGTCAGTGTGAGGTCCTTGATCATGGCAAAATCAAGCATTGGACTTAATGGAGTTGTTGTCTCGGATCGTAAAGAAGTAAAGACCAAAGGTATTCCATCAAATGCTTTGACAGGAAGCACAACAAGTCAATCTTTAGATGACTTAGTTCACGTGACTGGACCTATCACAGAGGATGCCATTATAAAAGTCTTGCAGCAGAGAAGTGCAATGGGAGAAAATTATACAAGGATGGGTCCAGTATTGATAGCTGTAAATTCCTTTGATCAGATTCAGTCAAAGGTTGGACCAAAACACAACCAACACCTCCAAAGAGTTATTCAAACCGTCACAAGGAAGTTAGCTGCTTCCAGAACACCCCAAGTAATTGTTTTGAGTGGCAGTGGAGGCAGCGGGAAGACTTTTACAGCATCTGCTTTTGTGCAGCAGCTTTTGGAACACTCAGGGGGAGGTCTGGATTCTGATATCTGTAAGCATTTTCTAGCCTCACTGACTGTGATCCACTCTTTAGGAAGTGCAAAAACAACAACAAACTCTAACTCTTCTAGAATGGGGAACTTGCTTGAGTTTCATTTGTCAGATGGTGTAATATCCAGGACCAAAATACAGGGTTACCTTCTTGACGCAACAAGAGTTACATGCCCACCTTCTAATGAGAGGAATTATCATGTCTTTTATGAACTCTTGTTTGGGATAACTCAAGAGGAAAGAGTCAAGCTCCACCTGCAAGGATATAGTGTTCAGTCCTTGGCATACCTCAATAGATGTTCCATTCCTTACAATGTGGATGAAGAGGATTACCAAGTAAAATTTGAGAAATGGAGGACTTCTCTAGTCACTCTAGGAATTCCCTTTTTAGATGTTTTGAGAATTCTAGTGGCCATCTTGCTACTTGGAAATGTGGATTTTGTTGAAAGCGAGGGTGCTGACCTTGAAGTCAAAGGAAACAATGAGATTAAAGCTGTTGCTGCCTTGCTTGGTGTTTCTGGTGTATCATTGTACAGAGGATTGACCACAAAGACTAAAAATCTTAGAGGGCAGATTCTTCAATCACTCTGTGATGCAGCAACTGCAAACGGTAATCGAGATGCCCTGGCTAAGGCACTTTACTGCAGGACAGTTGCCGCCATCGTGCGCCGAGTAAACAGCTACAAGAGAACTGCAAGCATGCAGCCACCAGCGCCGCCATCACCTCGGGGTTCCCAAGAATCATTGCGGGTATCTTCTACAGGATCTTCTTGGTCTCTCGGGAGAAGCACGCAAAATTTAGGAAGTGGCTTGCTGATGATGCCATTAACAGGGAATCCCCAGTCCTCACCAGTGTCTGATAGCAGTTTCCAGTTCACTGGAGGAGCTTCTGGTCTCATTGGAGTCTTAGACATGTTTGGTTTTGAAAACAGTCAGGTGAATCAGCTGGAGCAAATCTGTGTCAACCTATGCTCGGAAACACTGCAGCATTTTTACAACACTCACATATTTAAAAGCGCAGGTGACTTCATCAGGGAAGAAGACATCCTTTCTGATCTTACTGCGGATTATTTTGATAACGCTCCTTGCATTGAACTCCTTACCTGTCAGCGTGCTGGAGTGCTAACCTTGTTGGACAAGGAAAGCTTATTTGCTCGTGGTAGCTATCAGAATCTCTTGCAAAGATTAAAAGCACAGAACAAAGACAGTGAGTGCTTTTTTGATCCTGACCCAGCCAGCTCTTGTTTTGGAGTGTCACACTACGGTGGAAATGTTGTTTATGACGCTAGAACTCTTTTACACAGTAACCGCGACAGTATTGCTGATGACATAATTTGTGTTTTCTCCCGACAGAACTGTAATTTCGGCTTTGCAACGCATCTCTTTACCAACGACTTAAAGCCGCAGCAAGGACAGACAACTTCCCCCAAGGGGGCTCTTCACAGGATCTCACCCACGCCCCCTCAAGAGCAACAAAGCCCTGTGGGTTCAACCGATGTTCCCCTCAACACCTTTTCGCAAGGATTCCAGGACAAAGTTGATGTCCTTCTGAAGACTCTGGTCCAGTCTCAACCAACATTTGTACGATGCATCAAGATCAATTCGCGCGAGGAGCCCAATTACTTTGACCGTGGAGTTGTCAGTCAGCAGATTCGAGTGCTGCAGATTTTCGAAACACTGCAACTTTTCCTATCAGCGCTCGCTCATCGTTGTCAGTTCCATACGTTTGCTCAGAAGTACAGCTTCGTTTCGCCTCGGAAGCTGCGTGGTCATGAGCAGGCTGGAGGCGAGGATTGCAAAGCCATCTTTGAATCTCTGATGAGGAAACTCGACAGATCCAAAGGTGACGTTATAGCCGGATCTTGGGCCCTGGGGAAGAGACATGTTTTCTTTAGTAGTCAAGCAAGAGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HD67	Unconventional myosin-X OS=Homo sapiens OX=9606 GN=MYO10 PE=1 SV=3
P79114	Unconventional myosin-X OS=Bos taurus OX=9913 GN=MYO10 PE=1 SV=1
D3ZJP6	Unconventional myosin-X OS=Rattus norvegicus OX=10116 GN=Myo10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007274 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074637985.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074637985.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

51TPM > 0

2Conditions

16.4Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	27	5.65	16.37
all_coral_tissue · baseline	38	24	5.86	13.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.37
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.69
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.71
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.39
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.36
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.35
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.15
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.12
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.07
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.75
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.72
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.68
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.39
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.85
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.06
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.79
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.71
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.98
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.60
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.54
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.24
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.71
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.02
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.63
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.49
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.75
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.72
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.97
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.39
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.00
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.62
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.52
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.80
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.80
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.42
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.04
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.94
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.93
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.52
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.24
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.57
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.35
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.13
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.99
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.86
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.40
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.49
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.38
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.04
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.16
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.