Gene detail

Detailed information of XP_074638167.1 in Acropora palmata

Genomic Location: NC_133892.1:1189320...1202869
NR annotation: XP_029213445.2, LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 10-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074638167.1

ATGGGAACATTAGAAGTCATCCCGGAAGAAATATTCTCGAAGCCAAGAATGCGTCAACCAGAGAGAGGATCTAACCTTTACCAATTAAGTATAAGTCGCGCTCCACAACTCCGTTGCGTTAACAGTCTGGTGAAGTCTTGTGGAATTTGCGAAGACTGCTGTTTGGGCGTTAAATTGAATCAAACCAAAGAATGGTTTTGTCGTTGCGGAGAGCCAATTAAAAGAAAGTACTTGTTGGGTCTTGTTCAACGCTTTGATTCTCTGGATTTGGCGGAGTATATGACTTCTATGCTACAATCTTTGCAGTATAAGGATTTTACATACATGCGATCAAGGAGCAAACCAAGTTTGACGGTGGACACCTCCAGCCCACCAACGAACCACGCTTTGAATGAAACCGAATTATTAGATACAGTGGAAAATTATTTGAAATGGTTTTCGGCGAGTACATATTGGACCAAAGCGAACTATATGTTGTGTTTGATGCAATTGTGTGATTCACATTTACTGCACGTTGTAGCAACAAAGACTAGGGTCTTGTGCGAGATAGAGAGAAGAAAGCAAAGAGCACTTGAAGATGGCCAGATTATTAAAGAGGATGATGAGTACATGTCCCTGTGGAGTCGCATGTCTGAAAGCACTGTTCCTAATGTTGAAGAAACAGAAAGCAACAAGTCTTTGCCCACAAAATCAGTGGCAAGTCACACAGAAACTTCTGGTGTTCAGGGAACTGCTGACACTCTCTCATTATTCAGTGACGACTTAGAACTCGGCCAACAAAAGGCCCGCCAAGTGTCATGCACCTCAAAATCACAGTCTAACCAAGAAGCACACTCTTCTGATGTTCTTTCTGAGGTTAGATCACAAATCTCAGTGGGATATATAGGGAGTCCAATATCTCCATTTCAAAACAGATCAATAGCATCATCAAGACAATCTCTGCGAAAACATCCCAGTGAGATGACAGATTTTGAACGGGAATATTTCAGTGAAGACTACATGTCTGGTGAAGAGTTTGATGAGAATGTAGCTTCACCTGGAGCTGAAGCTGAATCTCCTGTGATAGATGGTGTGGGTTCTGAAAAGTACAAAGACTTTATACGCTGTTTACCTGTGCACTTGTCCAAACGGATCTTAGGAATGCTAGACAAGAACAGTTTGACAAACTGCCTGTGTCTGAGTAAACATTGGAGAGTTCTAGCAGAGGAAGTTAAACAAGATTACATGGTTCATCAGATAATGGTTGAGGAGATCATGCTCATGCAGGGAGCATATGGTCAGGGCATGAACCCAAGATATGCAAAACGTGTACCAGTTCATGTACCTCTAGAGCAAGGTGAGAATGTCAAACGTGTTCTGATTCAAGATCATGGCAAAACTCAGGAAAAGTTCAAAGGCAATCACTTGAAAGAATGCTATGAAGGCATTGCGACCAAGGAGGTTGAATTGGAGGAAAGAAATGTTTATTGTGGGGCTTACAATGTGCTGGTACTCCAAGACACAGAGGACCCAAATCGCTGTGCAAACTTCAGTGGTGGGCGGTTTGTCGTGTCAGGGTCTCTTGACAGACGTGTGAGACTTACAGACGCATCCACAGGAAAGTGTGAGAGGATCATTCAAGGACATGCAGGATCTGTGCGCTGTGTTTATGTATCAGAGACAAGAGGAATACTGCTCAGTGGGGGATATGACACTTCAATAAGGTGCTGGGATATAGGCAAGGGCCATTGCCAGTGCATATTTCGAGGACACAGAGGTTCTGTGCTTTGCATCTCACTACACGGAAACAATGTGGCTTCTGGCTCCAGAGACAAAAGTGTGAAAGTGTGGAACTTTACAACTGGAAAGTGCAGGCGGACTTTTCGTCATAGACACGTGGTGCATACAGTGCAGGTTTCGGATACAATTGTTGTAAGTGGATGCGAAGGAGGGAAAGTTAAAGTGTGGGACATTGAGCAAGCATCTCTACTTAAGTCTCTTGACGGTCATCACGGGGCGATCACAAGTGTGACACTTGACGAATACCACATCCTAACCAGCAGCTTGGATTGTTACGCCATGGCGTGGAGTGCAATAGGAAATCACAAGAAATGTTTGCAAGCATTTAGACACCCTAAGGAGGTCCTTTGTCTGGAGGTTCTGTTTTGTCGAGTGATAACTGGTTCTGCAGACGGGAAGTTACGTATCTGGAACCTGTTAAATGGCGATTGTCTCCGAATTATTCGCGGAAACAGCAAAAACGATGCCATCAACACAATAAGAGCATCGGGAGACAGGATGATTGTCAACACGCTAAGCAATCTTTTGATATTCAATTTTGAGGCTGTACAATGGGATTACGGCTTGCCACCCGAGCGACCAGAGGGACTTGGAAACCTGAATATTTACGGTAAAACTCCACCCCGGAGACTCGCACGCTCCCACGTGCGTGCACATAAACTGATGCGCGCTGACACAAAAGACAGTTTACCCTCGCGAACTCCTTCACGCGCAAAAACACCGATGTTCGACTTCAACATCACAGCATGCCTCGCTCCACCAAGCAGCTTACAGCAACGAATATCAAGCGCTCCTCCACGAATTAAGCACAGCGAAAGCACCTTGACCAGTATGACTGCTCATGTGCAAAGAATTTCCCTAGCGCATGGAGAACAGAAGCAGAAACTTCGTCCTCATTCATCGCCAACTACAAGTTTTCGTGGATCACTTGAGCGAACTGATACTGACGTCTTTCCGATCAAGGTTGATGGTGACTTAAGAACTAGTATGATTATCACTAAGATTAGACGCTCGCATCCCAAACCCCCTTCACTTCAGGAAAACAGGCGGTCGCAGGTTATAACTCGTAGCCGCTCTGCGCCTGCGTACCGAACGCAGGTTCTGCCTCCAGGCAAGCGTGGATGGACAACTTCTGCGGCGGAGCCGCTGAAAGCACCTGAGAATAAAATGATGGTTACTGCTGAGAAAGCGCGGGAAAAAGTCGCCAGGATGCGACCCCAAAGCGCTCAAGTCCATTCAAACAAAGAAGCTATTTCCATTGATCCGGTTAAGAGCCTTTCGTCTTTGAACTTGAAGACTTACAGCAGTCAGTTGGAAATTGAAAAAGAATTAATGCACGGATCCTTATGCAACGAGACAGATAAGCCAGTGACGCGTGATAAGAGGGTTAGCCGTCGTCCGAAGTCTTGTATTCCTTGCGTTCGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XX13	F-box/WD repeat-containing protein 10 OS=Homo sapiens OX=9606 GN=FBXW10 PE=1 SV=2
O95170	F-box and WD repeat domain containing protein 10B OS=Homo sapiens OX=9606 GN=FBXW10B PE=2 SV=3
Q5SUS0	F-box/WD repeat-containing protein 10 OS=Mus musculus OX=10090 GN=Fbxw10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006553 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051075 all species →	Family	SCF complex subunit WD repeat-containing protein	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19872 all species →	UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10266	FBXW10; F-box and WD-40 domain protein 10	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074638167.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

56TPM > 0

2Conditions

8.7Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	31	4.02	8.66
all_coral_tissue · baseline	38	25	3.77	8.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.66
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.74
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.68
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.60
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.29
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.94
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.90
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.90
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.88
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.83
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.77
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.56
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.43
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.30
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.16
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.12
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.95
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.81
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.80
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.70
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.59
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.57
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.31
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.20
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.76
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.51
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.51
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.48
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.51
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.35
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.28
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.59
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.12
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.65
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.66
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.44
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.37
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.34
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.29
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.26
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.04
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.77
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.75
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.29
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.26
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.20
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.10
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.10
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.10
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.99
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.82
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.79
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.74
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.67
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.56
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.43
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.