Gene detail

Detailed information of XP_074639072.1 in Acropora palmata

Genomic Location: NC_133892.1:9036038...9043303
NR annotation: XP_029202769.2, uncharacterized protein LOC114966956 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074639072.1

ATGGTGTTTTCTTTGAAAAATGTTGATGATGCGGGCTTTGGGTTTCGTGATAGCTCAAAACTGGGAAGTCTTCTCAACCAAAAACGACGGGCAAACCAGGAGGAGGCTAGACTGGTAAATGTATGGGGAAGCTTCGGGCATGTTTTTGTGACGACCAACAAAGGATGTAACTTGCACGCTTTTGAGGCAGTTCCTCGATCGAAGTGGAGTCCAGAAAGCGAAGGGCTGCTTCTACAAGATCATGAGTCACCCATTGTGAGTGTACTTTCTAGTGCAACCAGTCCATCTGTTATCTTTATTGTCCATCAAAACAGTATGACACAATGCTGGGACTTTTCTCAGTCCAACTTCAAGTGGGTCAAAAGAAATGACTTTCAACTGAGCAATACTAAAAGAGTTGAAGTCTTACAGGTTGTTCTTCATCCTCTTGTGAATGCAGTGCTCTGGTGTGAGCGGCGCTCTGTGTCACCATCTTGTTCAGTCAGCTGCTGTGTTTGTTTGAGAGAATTGACTCTTTCTGATCGTCTTGGCAGCAATGCTGGAGTATCCATGGGACCATTGGTGGTTATACTTCATGGCTGTCCTTCTATGTTATTGCATGTGATTGGAAGGGGTGTTTGTATGGTTCCTGAATTTCTAGAGGAGCTAAGAGACATTATGCTCTTTTGGACGTTTCTTCAAAGGACATTAAAGGTTTACATGTGGAGTTACGGATATATCGGAGGTGTCGAGAAAGTTGACTTTAAAGCAATCATTGCTGATTTACTTTGCCCATGGGTGTCAAACACAAAGGAAAGCTCATCTCATATCACTGCTGTTTTGTCTCATCCAAAGACTTACGAACTTCTTGTTCTGGATAATGCTCTAGAATTATCATACTTTAGACTTCAAGATTGTGATCCAATCTTAAACTCCCTTGTCAAACTTGGACATGATTTATCACCTTGCAGCGACAAGGTTTCTCGTCTATTTGCTTTTGGTCTTTTTGCTGGTGTTATCTGGGATTCTGGAATGATTTCAATTTATGATATTGGTAGTGGAGCGCATCTTTGTAAATTAGAGGACTTGCAAGGACAAAATGTTCAGGTTTGGGGCTGTCAGCACTTGGTTAATTCTGTTGGCTTCTGGGCAATCAGTGGAATTTGGAAGCTTCAATCCGGGACAGTTGTGGAAGTTTCTGAGTGCATCCGATCTTCTCTGTCATGTAAGAAGTTGGGCTCTAAAAAAGCAGATCTCCTTAAGGTTGGAGAACTCTCAAATAATCTTCAAATGAAAACACAGCTTTTGGAGGAGAGAGGAGCTTTGGATGGTATTGCATTACTGGATTTCAAAAGAATTTCTGAGGAATCTGTTATTCCTGAGTTTGTTAGTGATGCAAAAACTAATGAAAAGTCACTGCAAGAGAGTGAGCAAAATCTCTTTGCTGGTCCCTTGTTTGCTGCAAATCATTTGATAAAATGGAACATGAAGCATCGGGCTGCCAAGATTGCACTAGATTCAATTGTTTCTTCCCAGATTGTTTCAGATGGTCATAAAATAGATGAAGAAGTCCCAGAGTTGTTCCTTGATCTCTTAATGGATGAGTGCACACAAAGCCCAGCAATGGCTCTTGCACTTTTGTGGGAACATCCAATTTACAGAGAATTAATCTGCTCCAAACTTGAACAGCATACAGAAGAAAGCTGTGAAAGGCCCCAAAGGAGAAAAACATGTCTCACTGCATTGTTGCATCCGTACATAAGTGAGTTCCTGTTATTGAGCAAACAGATAAAGTTACCAGTGGATTGCAATTCTGATGAAAGGAATCTACCGCATTCTTTGCCCACCAATTCAGTTCACGAAGAGGTCACTGCCTTGTTGGAAGAATTTGATGTTGGATCACTCGATGTGACATCACTTGAGAGGTTAAGCACTCTGACTTATCAGCAACCACAAAAGGTTTTGGACCTTGTTACAGAGTATTTGAAAATGGATTCAGAGAGCAAAGATTTCAAGGACAGTCAATGTGAACAGAGATGGAAAAAGACTTATAGACTTGAATGGCGAAAACAAAGATGGCAGAAGAAGAGAGTTGCTTTGAAAGAACCTATCAATTCTATCTTGAGTATTCTCTTGCATCTCTTTCATAAGTCAAAATCGGAATTCCTGACGAGGTCAGTGGAAAAGGGAATGAGTGCTATTCATTTACGCAAGTCAGATGAGAAACCTCAGGAGTATATATTGCAGTCAGTGCTGGGGTGTCTTCCAGTGTTGCATACAAGCAACACTAACGCCGAATCAGTCAAAATTCATGCCCAATTGTATTACTCTATCGGTCAAGAAACACAAGCTTTGGATCTACTCCTGACCAATCAAATGTGGGAAGAAGCCATTGATTTTGTGTCCTGCTGCGGAAATGACAGTGAGACCCAAACTGTGTTGTTTGTCATGTTGTTTAAGGCACTTCAGTATGGAAAGGCACCAAGTGGGAATCTGGTCAAAGCCCTAAGCCTGAAGCCAGCTGATTTTAACACCCATGAGCTCCTGGCTATGATCATGAACCAAGCGCCAGTTAGCAAGGATCCATTTGACAAGGGTCCCGGACACACCTCGTTATGGGATCTTAGGCCATTTCTCGATGTTCTCTTTACCTCGCCGAACGTAACATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007799 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15702 all species →	HPS6	Hermansky-Pudlak syndrome 6 protein N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046823 all species →	Domain	BLOC-2 complex member HPS6, N-terminal domain	Interproscan
IPR017218 all species →	Family	BLOC-2 complex, Hps6 subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14696 all species →	HERMANSKY-PUDLAK SYNDROME 6 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0006996 all species →	Biological Process	organelle organization	Interproscan
GO:0031084 all species →	Cellular Component	BLOC-2 complex	Interproscan
GO:0032418 all species →	Biological Process	lysosome localization	Interproscan
GO:0072657 all species →	Biological Process	protein localization to membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20192	HPS6; Hermansky-Pudlak syndrome 6 protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639072.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

57TPM > 0

2Conditions

25.5Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	29	3.99	14.13
all_coral_tissue · baseline	38	28	8.99	25.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.13
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.80
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.74
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.69
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.28
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.97
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.69
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.69
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.37
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.76
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.85
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.65
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.55
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.33
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.25
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.97
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.10
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.37
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.35
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.00
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.68
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.58
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.49
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.25
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.95
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.24
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.74
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.58
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.54
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.55
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.28
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.69
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.64
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.61
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.77
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.55
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.37
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.27
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.16
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.13
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.86
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.67
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.57
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.93
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.81
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.52
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.36
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.06
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.73
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.68
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.46
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.15
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.50
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.40
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.99
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.57
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.52
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.