Detailed information of XP_074639097.1 in Acropora palmata

Genomic Location: NC_133892.1:180878...217946
NR annotation: XP_044184852.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114959305 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7Z442Polycystin-1-like protein 2 OS=Homo sapiens OX=9606 GN=PKD1L2 PE=1 SV=5
Q7TN88Polycystin-1-like protein 2 OS=Mus musculus OX=10090 GN=Pkd1l2 PE=2 SV=1
Q2EG98Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000050 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF01822
all species →
WSCWSC domainDomainInterproscan
PF20519
all species →
Polycystin_domPolycystin domainDomainInterproscan
PF00801
all species →
PKDPKD domainDomainInterproscan
PF00754
all species →
F5_F8_type_CF5/8 type C domainDomainInterproscan
PF08016
all species →
PKD_channelPolycystin cation channelFamilyInterproscan
PF02010
all species →
REJREJ domainFamilyInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF13385
all species →
Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035986
all species →
Homologous_superfamilyPKD domain superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000601
all species →
DomainPKD domainInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR002889
all species →
DomainCarbohydrate-binding WSCInterproscan
IPR000421
all species →
DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR046791
all species →
DomainPolycystin domainInterproscan
IPR000434
all species →
FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR013122
all species →
DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR000519
all species →
DomainP-type trefoil domainInterproscan
IPR002859
all species →
DomainPKD/REJ-like domainInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR022409
all species →
DomainPKD/Chitinase domainInterproscan
IPR051223
all species →
FamilyPolycystinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877
all species →
POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005262
all species →
Molecular Functioncalcium channel activityInterproscan
GO:0050982
all species →
Biological Processdetection of mechanical stimulusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074639097.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639097.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
50TPM > 0
2Conditions
3.9Max TPM
0.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 26 0.70 3.84
all_coral_tissue · baseline 38 24 1.22 3.89

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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