Gene detail

Detailed information of XP_074639303.1 in Acropora palmata

Genomic Location: NC_133892.1:4393131...4421284
NR annotation: XP_029189730.2, uncharacterized protein LOC114956706 isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074639303.1

ATGGACAATGCTTCAGAGTCTCAGAAAGAGGATTTTAATAAAGAAGAAATTGACCCTGTTAATCTGATGTTCATTGAAGAACAAATAGAAACTTTATCGCAGAGTCAATCCCTTGAAGGGGAATGTCAATTAACTGTGAATCCAATTGTGGAAAAGAAAGTGGATTCTGATGATGCTGAGAACCTAATCACAGAATTCTCACCGGAAGATGCTAACGACAAGCACCCAGAGGAGAGTCAAGGACCAGCTCCAGAAACAGTAGCATTAATCGGTAATGATCCTGTTACAGCAGATGTGGTGATAGAAGAGATAGCAGAAACTGTTAACTCACTGGAAAATGCTGAGATTCAACCAGTCACCTCTGTTGCAAGTACATTGACTCCTTCCAGTGAGCAAGTTGAGACTACAGAGGAACAAAAGATGGATGAGGAAGATAAGCCGGTAAAATTTGGGAAAATATGTGATCCACAAGCATTGGGGTGCTGTGAATTCTGTGGGGGTCCCGTGAAACGCCGTCGTTTTTGCTCTCCTGTGAAGAAGTTCTGTTCGAAGGGCTGTGCGCGGAGTGCAAGGAAGGCCAAGAAGAAAGAAATTGAAGACATAATCAATGGGCAAGAATCTGCAGATGAAGGTAGTTCATATACTTGCACAGTAACAGGGAGTGAAGGGGAAGCAGCTCATAAAGTAACATGGAGTGATTATATGGAAGCTGCACTCAGCAAAGCAGCTCCCGACTGCTGTTTCAAATATACAACAATTGATGTTCCGGGGTTGAAGCCTGGAATGAAGTTAGAAGCTGTGGACAGGAATAATCCACCATCATTCTGTGTGGCGACAGTGATACAACAAGTTGGACACAGAGTGCGCATTCGATATGACGGTTTTGGGAAGGATAGCAGCAATGATTGCTGGTGCAACTTTCAAGCTGAAGAACTTCATCCGATAGGGTGGTGTGCTCAGAATGGTTACCCTCTCCAGCCACCAAAAGGCATTAACAGCTCTCTTGAAGACTGGAGGACATTTTTAACAAAGACACTCACTGGCGCACTTGCAGCGCCACCTGACCTGTTTAGAAAGACTCAAGAACACTTTCAACGACGTGTTCATGGATTTGAAATTGGCATGAAGCTAGAGGTTGTCCACCCTCTGAAGCCCTCAATAATTTGTCCAGCGACTGTAACTAAGAGCCTGGGTCCCTATTACTTTGCCATCACCACCGACTACCAAGAGGATGTGTCATCAGTCACATTCTGTTGTCATGCCGATTCACCAGGGATTTTTCCAGCGGGATGGTCTCGAAGGCATCAAGTTGAGCTTGCCGTACCAGCAAACTACACAAAGGAGACATTTGTGTGGGAAAAATATGTGGCACTTTGCCGAGCACCGTTTGCCCCAACACATTTGTTTAGAGCCCAGAAAATGAAGTCGCACAAATTTAAACCTGGAATGAAAGTGGAAGTGGTTGATCTTGAGAAGCCACAGATTATCCGTGTTGCCACCATAACAAACATCTTAGGACGAATGCTTCAGCTGTTTTTCGATGGCCATCAGCGATTTCAGTTTGTGGATTGCGAGTCGACCGATATTTATCCTATTGGTTGGTGTAAAAGGACAGGTCACCCACTTCTCTCTCCATTTGGACCAATTCCTTCGGATTCATTAAGCTCGACCGAGAGTGAAGAAATCCTTGACTTGCCATCGTTTCTTGAGGTCATGGAAAGGCAGAACCGAATCCAAGGAGTGCAGTCGGCTGTGGGTTTGCTGCCAAGAAAGATTTCTACAATAAGCAAAATTGATAAAGATGACAAGTCAGCTGGTGAAGAAAGCGATACAAGTGATGACGATACAGGTGCTGAACGCTTCTATCACAACAAAAACCAGATTTTCTTCAACAAGAGTTGCTGTTTTGGTCCCCTGTTGGACCCTGACAAGGTTTCACAGCTGCCCGAGGCCACCCCTCCAGGGAAGGTCAGCAGTGTCATACGCACGGGACTGGAGATGGTGGCCAAAGCGGCATTTGATCCGGAGAAAGTCATTGATCTGATGCAGGAGGGATGTGGGGTGAGGGTTGTGGTCAAACACCAGGGAAAGATCTTAAAGAAGGCAATCTCGCGCGTGGATTCGAGGCCAAAGCTTGAGCGTTATCTTAAGAGATTCTGTCGGCGTCTCATATGTTGTGAATTCTTCTTGAGTCTCAAACCGGTGCCTACGCCTTGTCCTGACCAATGTCAAGCCGATGATCAAGGAAATTTGCAAGGTCCCAAAGGACTCAAGGCTAAAAGATCACGCGAGTACTTTGAAGTCAAGCATCTTGGAGTCGAGAAGAAGAAGAGAGGCCGGAAACGGAAGTCCGAGTACATTCTTCCGGCGGAGCCAAACAGTATCCTTACCAGGCCTCTGGTGGATAATGGTATATCCCTACCAGGGGCGGTCTTCACTGTTGTTGAAGGGCAAACGATATCGGCAACGGTAGCAACTATTGCACCTGTACAGAATGGATCCTCTGGCGCTCAACCTCAAGGGGCTCCGGTAGTGCCCCCTCCGGTGGTACCTCTGGGGTCCGTTAGTTTAGGACCACCGGGTTATCAAGGCCCTCCCAAAGCATCAGTTCCTCGTCCAATCAACCCGGTAAAACCCGTTCCCATGCTTGCTCCTCAGGGGAAACTTCCCATGGTTCAATCCCACCGGGCTCCTGTACCGATCAACGCTTTGCCAGGAGGGAAACCAGTCATGAAGGAGGGCGTCCAGCCTCACAATGCCCCCAGTGCGCCAAATGTCACACTGACGGACGGTTCCAGTCGCATTGTGACCAACGTGTCCAGCCAGAGATTTGAAACCAGCGCTACCAGCTCAGGTACCACCATCACCTTTGGTCGAGCCCCGCCCAACGTGACCATCTCAAACTGCGTTCCTCCACCGCTGACTAAGATAGCCTCTGAGGGAAGGAGCAGTCACGTGACAACGACGACCAGTGTGATGGTCGACCAGCCGAATCAGCTGTCAGTTCACGCTGCGTCCACAGTCCAGACGGCCAGTAGTACTTCTACCCCTCCCCCTTATCCTTCGACCGGTTCTCCGCACGCTCCTCCGATGGTCAGACCGTCTTACAGCCCGGTCACTGTTGGACAAGTGCCCGCGTACAGACCAGTGACAAGTCCGCCCGTGTATGCCCGACAGGTCGTAAATTCGGGTCCCCGAGGAGTGATTCGCCATCCTGGAGTTCATCCTAATTCCTCGTCGAGCCAGTCGGTCATACAAGTCAAGCCGAGCTCCGGAGCAGCTCCTCCCCCTCCTCCCCTAGTTTCGAATCCTCGTGTACCCCAGAAGGCATTACGTCCGCAGGGACTGTACGTGCCCCCTCAAAGCAATAGTTCAACGTCTGCGTCACGTGCGCGACCACCGCTTCCTTCACATCCAACCTCATATGGTCCTTTACAGGTCCGAACTGGGGTAATAAACCATCGCCCTCAAGGGAATGCCCCTCCTCCTCTCAGCAGCGCCGCTGTTGCACCCAACACACACACTCAAGCTGGTACAGGCGAAAAGACACCGTCCCAGCCCGGTGCACCTCACACTCAGAGGCCCATAATACCAAACTACCACGGAATTCCTCGATCGATGAATTTGCCGAGAAACTCTGCTCCTTTAAGTTTCTGCAATGTCAGGAGTTCCATTGCGGGCGGATTCGGTCGGCAACTTCCTCCACAAATACGTCCGCAGGGGACTTCCCCAGGGCCACTGCAACAGAGTTTCAAGCTGCGCTTTACAGTTCCTTCAGTGTCAGGAACTGTACAGCAGCGCAATGTTGAGTCCAAAGCTCCTGTCACTTTCGTAGACTCAACCTTAGTGCCAAAATCACGCGTTGGACCTACGCCCATTAAACCCAAGACATCTATTGAACACCTACAGGCCTTGACGAATGCCACCAACCAAGTTGTGGTCAATGAAGAGCCGAAAGCCAAGGCGGAACAAGGCAAGGCTGTCGAAGAAGGAGAAGACGGCGAAAGTGAAGAGAAGTCGGGATCTCCTCCGAAGAGGAACTTGTGGTGGTTGAAAAAGAAGCGAAGGAAGCGCTCGCGGTTAACGTACATCAAAACGAAGTACCGCCGGAAAGATGACGAAGGTGCACCGAGTTCTTCGGAAGTGGCTCCGATGGAGATGGAGCTCGAAGACGACACTGAGCTCGACTTGGAAGATGGTCTTCCGATCTCTCCTACTGGAGAAAAGCCCAAGCGAGGCCGGCCACCGAAGGGAATCGGATTCCGATTTAAGGGCGAAAGCCTCTCGAACAGTGATCCCGATTGGGACGAGACCGAAGAAAGGAGACGGGTGAAAACTGTTGTCAAGAAGAAAAAGGGACGAGTCAAGAAAGAGTCAACAGAAGTTTTTTCACCTAAACAAAAGTCTTCGAGCCTCGAAGGTGGCTCGCAGATGGCAGGCTTTTCCGGTCTGAATATGGTGCGGGAGCCTGGGAAGAGTCCTTTCGGTGGCCCCTCATCCATGGTGCGCTCGCCTCCGGTTTCTCCGCGGACCATGCATCGTGCTCACACGGTTCGCATGTTGGGCGTGGCAGGTGATAAGCGCATGATATCCCCAAAGGGGTCCTCTTCTAAAATGATGCGCATGAACTCTGGACCAGAGAGCAAAGGTCATCATTCTGCATCGCGATTCTCGCCCTACCCTAGCTCTCCTTCGTCTGCCATAGCCTCCTCCGGTCAGCGTTCCATTCGTCCCAAGCCATTCTGTGTAGACGTCGGTACCAATACGTCACTTCCGGGCTGCGTGAATGGGAGGTCCCCTGACCTTCCTGCCAACCCTGTGACGTGGTCAGTGGAGCAGGTAGTCAGATATGTGCGTTCCACCGACTGCATAAATTATGCAAACATATTCTTAGACCAGGAGATTGACGGCAAAGCATTGATGCTGTTGTCACGTGATTCTCTAATGCAATTCACTCGGATGAAACTGGGACCGACTCTGAAAATGTGTAGCTACATCGCTCAACTCAAACTTCGCGCCCGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHJ3	Scm-like with four MBT domains protein 1 OS=Homo sapiens OX=9606 GN=SFMBT1 PE=1 SV=2
Q9JMD2	Scm-like with four MBT domains protein 1 OS=Rattus norvegicus OX=10116 GN=Sfmbt1 PE=1 SV=2
Q9JMD1	Scm-like with four MBT domains protein 1 OS=Mus musculus OX=10090 GN=Sfmbt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004967 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12140 all species →	SLED	SLED domain	Domain	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR038348 all species →	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR021987 all species →	Domain	SLED domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074639303.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639303.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

63TPM > 0

2Conditions

15.5Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	35	6.43	15.51
all_coral_tissue · baseline	38	28	6.96	14.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.51
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.22
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.67
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.67
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.58
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.97
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.87
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.66
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.52
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.50
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.46
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.31
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.24
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.59
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.31
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.22
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.90
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.51
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.11
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.01
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.79
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.40
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.39
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.08
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.06
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.86
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.77
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.70
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.62
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.51
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.35
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.23
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.75
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.54
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.91
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.32
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.06
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.98
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.88
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.81
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.60
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.54
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.32
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.67
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.54
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.35
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.22
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.06
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.91
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.87
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.43
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.42
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.41
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.40
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.29
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.92
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.42
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.57
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.18
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.13
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.80
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.33
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.16
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.