Gene detail

Detailed information of XP_074639486.1 in Acropora palmata

Genomic Location: NC_133892.1:1605010...1616425
NR annotation: XP_029190988.2, polycomb protein suz12-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074639486.1

ATGACAACCGAGAAGTCGGAAGGGGTTTATCCCAGTCCGAAGAAGACAAAGTTCGAGCAACTTCGAGCCGACCACGAATTATTTCTTCAAGCTTTCGAAAAACCAACACAAATCTATAGATTTCTTCGAACGAGAAATGCCGTAGCGCCGGTGTTTCTTCATCGGACACTTTCCTATATGAAACATCGACGAACCCCAAGGTCAGGAAAAAAACGCAAAGATTTCAAGGTTGACAACATGCTGGAAAAAGTTCAAGATGAGAGTAGCAGGTTCAACTCAAGAGACCCTCTTGAAAACAGTGGATTCATGAACTTGACTTTCAGTGGATTTTATCACGGATCTGGTCCAGTGAACGGTGATTTGGCTGGCAGTAGGAAGAGTTCCCTGCTGGTTGAGGATTTCATTAAAGTTGATGTGCTTCTGGTGAAAGTCTGTCATAAAAGAAGGAAGGAAACCGACCCACAAGTCGTTACAGTGCCACTCGGCCAAGGCTCCGCTCCTTTCAATCCGCGCTCCCAGTTGTTACCAGCCTCCCCCTCGGCCTCTGTGTCTGTACCCAATGGTACCTTCAAGAGTGGCAAAACCAGTCGAACCTGTATTCTGAGCCTGCAGGTCAGCGTTCCTTACCGCATCCATAGCAAGGGTCCCAAGAAAAAGCGAAAGAAGAGTACAGTTGGAGCCCAATCTGACCTTGGCGAGGCGGAGAACGGAATGGATCTTGATACGCCCTGCTCAACGGGTGCCCCTGGAACGGAAACCCCTGACGGACCCCCCACAAAACGGCGACGAACACATTGTGTTTCACCTGACGCAGAATGGGACAGCGGCAGTGCGTCAGAACACTCGTCTAGTTATGACGTTGAGCACAAAGTGTACATCGCCGAGCTAATTGTTTTCGACAATAACAAGCACTGTCTGTTGACCGACGGAGATTATGAGCTGGCACTCAGCGAAAAACACAAGAAACCTGGACGAAAGAAGGGCATCCTGTCCAACAGATCTTCTTGGGATAATGTGTTTGAAGGACAGATGGGCCCTTTCGAGGTGTTTGCATACGGTCCCACCCTAAAATTTAAACTCTCTTGGTCTGGTTCGCCTTTGGCTCGCCCTCCAAGGCGCCCTACGTCACTTCCAATTCGCTCGCCGCTGACCGTTCAGAACTCACCATCCACGACAGATGCACGCACGCCTTCGGAGGAAGCCGACGGGAATAAAGAAAACAGAAAGAAGCAGCGAATATTCTACCAGTTTATTTATAACAACAACACGCGGCAGCAAACTGAAGCTAGAGAAGATCTTTACTGTCCGTGGTGTTCTATAGATTGTCGTCAGCTCTACAGCTTGTTAAAACATCTTAAGCTTTGTCATAGGCGCTTTGTCTTCACCTACGCGCCTCACAGCAAGGGAGAGAGAATAGATGTTAGCGTGAACGAGAATTATGATGGATCTTATTACGGGAAACCTGAGGACATGAATGATCTGTTGGGATATGCGCTCAGTCGTGAGGGACCATGCAGGAGGTTGTCGAACACGCACGTAATGGTGTGGAGACCGCAACGCCGTAGAGAGAGTTTGTCAGAATTCTTAGAACCGGACGATGGCGAATACGATGCAAACAGGCCTTTCCATAATGGACATCACAGAATGTACTTTCACTCGAAGACAAAACTTCCGATTCGAAGCGCGGAGAAAGATCAAGACAGTGAAGACGAGACAATACCGGAATGGATGAGAGCTAAAACAATACAGTTAATAGACGAGTTTACAGATGTGAACGACGGAGAAAAGGAGCTGATGAAACTTTGGAATCTTCATATGATGAAGAACAGCTATATCGCTGACTTTCAAGTCCTCGAGGCTTGTCGTTCATTCATCAGTAATTACAGTCGAGATCTCAAAGAAAAGAACTTGGAAAGGAACTTTCTCCTTCATCTCATGAATTTGCACGATTTCAATCTAATAACTTCTAGTCAGATCGAAGAAATTATTGGTAAAATGAGAGAAAGCTGGAAAGAACTTAGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VA03	Polycomb protein suz12 OS=Xenopus tropicalis OX=8364 GN=suz12 PE=2 SV=1
Q15022	Polycomb protein SUZ12 OS=Homo sapiens OX=9606 GN=SUZ12 PE=1 SV=3
Q80U70	Polycomb protein Suz12 OS=Mus musculus OX=10090 GN=Suz12 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006233 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09733 all species →	VEFS-Box	VEFS-Box of polycomb protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019135 all species →	Domain	Polycomb protein, VEFS-Box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22597 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016586 all species →	Cellular Component	RSC-type complex	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11463	SUZ12; polycomb protein SUZ12	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639486.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

53TPM > 0

2Conditions

18.5Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	29	6.43	17.45
all_coral_tissue · baseline	38	24	8.27	18.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.45
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.40
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.34
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.71
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.65
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.46
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.35
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.46
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.38
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.99
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.93
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.90
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.43
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.23
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.00
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.49
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.95
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.84
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.84
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.63
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.77
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.31
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.97
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.65
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.64
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.78
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.40
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.39
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.56
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.48
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.02
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.69
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.26
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.23
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.03
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.98
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.81
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.71
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.67
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.52
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.77
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.21
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.09
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.59
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.06
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.49
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.23
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.69
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.05
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.48
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.95
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.81
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.34
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.