Gene detail

Detailed information of XP_074639663.1 in Acropora palmata

Genomic Location: NC_133892.1:5166698...5179188
NR annotation: XP_029193319.2, uncharacterized protein LOC114959428 isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074639663.1

ATGCCTAAATCTTTAACAGAGATGGACGGAACACTGGAGGCCATCCGTCAAATTCGATCAGCTGGTCGCATGAATCATCAGCGAACTCACTCAGCCACAACGGTCGGCTCCATTGATGACAATGCCTCTGTTAGCTCCAACTTCAACTCGGCTACCAAACGACGCGGATCAAAATCACCGAATGTTGATTACTCTGGTCTAAGAGCTGCTGCAGGAGTTTCTCGAATGAAGCACGGTCGCCTTCGGAGAGGTTCGGCTTATCCGAATGATGTCACTGGAGTTGTCGACTCATCTTCGGCCAAAGGACGAAGAACGAGTATCTTGACAATAAGTGATGTGGGAATCAAAATGCGACGGCGCAGACGAAATACAACGGAATCCTGGGGAAAACATAGAACCAGAGGGGAAATTCGATACTTTGACAAGCACCTTTCCCCAATAGAGTTGTTTCGTCGAGCCGTGAAAATCGTTCAAATGTGTGCTTCACTTTGCCAGTACAAGTATGAAAAAGAAAATGAAGGAGAAAACTTGGCGCACACCGTTTTCACTCAGTATATCAACGAAAACGAGAACAATATGGAGGCCGAACTTGCTTTCGACGCATCGTTCTTCAAAGCTAATAGAAAGATGAGGATATCAGCAGAAGTGAAGATGATTTTATCAGTACACCCAGAGCAAAGAACAGAGCAACAATTGGCAAAGGTTTTTTTTTCTTTGCGATCAATTCAATCTTTTGCAGAATATCCTCAGAGAATTCAGCAGAAGCTTGTTCGAGTTGGTTGGTATGAAACACACCAGACCAAACGAGCAATCCTCAGGCAAGGACATATACCGCAGGCCTTTTACTTCGTTTTGTCAGGATCAGCTGTTGTTACGGTTATGGAAGAACACGAGAACTTCGCAAGAACAGTCCACTTTCTTCGACGAGGCGATAGTTTCGGGGAGCTGGCCATTCTTCATGACACTCGGCGCAAGGCCACTGTCATCTCGCGCGAACCAATCGAGTTGTTGGTTATTTCTAAAGAGGACTTTGTAGACATCTTTATGCTGGCAGGAGGAAACAAGAATATCAACGACCCTGATCACAAGAAGTTTGTCCATAATATTCATTTCCTGAAGGGATGGCCCGTAGAATTAATGGCAAGCAATCCCAAGAAGTGTCTTTTTCACTTTTTCAGGAGTGGCTCTGTTCTTGTCAAGGACAGCAATCATTCGGACTGGATTTATATCATAAAATCGGGAAGTTGCCAAGTTCTCAAGAAGCTCAGAGAAGTTAAAAGTTGCCTCATTCAGCACAGCGACAGAGTCGTAGGATTCGAAAATGTAAAAAGCCAGGTTCCCAAAGCCTTATCGCGCAAGAGACTGGAGCGAGTGAGGACCAAGCTGTCAGTCGTTACGCTTTTACTTCCCAAGCTTCATAGCAAACCGGGTCTGATCACAAAAGAAAGTGACGATGAGGCCGACTCTGGGAATGAAGCAAACAGCATAGATGGCTCAGCCATTGACCATGTCGCCGCTGCCCAGAAATTGACTGCCGCTCCTGAACAATCGAGCAGCTCAAAATCTGCCGAAGAGGGTTCGGCAAAGATCGGCAATCTTCGCATCCCTTTATCACCCACGGCGAGGCGAAAAGGCGTCGTTAGTGCACCGAGAACGTCAGAGATAATAAATATGGATGAAAATTTAAATAATGTTAAAAACTCGCTTGATTCGAGAAGAACGTTTTCCAGTGGACCAGCAATGGTTACTGTTAATCATGAATCTGATAAGGATGGCTGCCAGGCGAGGAAAGTTTCCTATCTAACTCTTCCCGGGACACAGGAAAACAAAATGCCACAAGAACAAAGAAAAACATGTAGTGGCAGGCCACTGTCGCTACCAAGCGTTGAAGAAGAGGATCACCCGTCTTCGACCATGTCAACCTCATCACGTTCCCGATTCAGTACCTTGCAAGTAGACTCAGCAGACAGCCAAAGACTTGGAACCGAGTCATGCTCTCGTTCCAAAGCTAACAATGTCCACAGGAAAACCAGTAAAGTGAGAGCAAAATCAACAGTCACACCTCCAAATGGGGATCTATTATCAGAAGAAGAAAAGAAACTTCCTCTTCATAAGATTTCCGTTATCGATGAAGGGGAGCAGAGACCGACTGAAGTACGCATTACAGACGCTGATTTGCATCCAATGTTTGTTCAAGTCGCTCTTCTTCAAAAAGGAGACTATTTTGGTGTGTCTTCGATGATATTTGACGAGCAACCCAGCTTGAGTTTGGTTAGCAATGGCGCAGAATGTATAATGATCTCTAAGAAGTTTTTCATGAATCATTGCTCTGACGAAAATAAGAGACGCCTTTTTGTCACGGAAATACCGTTCCCCAATGACGAGACTCTTCAGAAAAGTTTACAGGACAAAGTAAATTGGGATGCTTACCGACGAAAAACGCTCAAAACTCTCGTTCGTCAGCTTCCAAAGAATCAGAGAAGAATTCAAGACACAATGGCGCACAGAAGAGCTAAACGGGACATGTCTCTGGGGGAAGACTTGAAAGAAGCAATTAAGAAGATGCAAAGAAAAGACGATGATAGTTGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95398	Rap guanine nucleotide exchange factor 3 OS=Homo sapiens OX=9606 GN=RAPGEF3 PE=1 SV=6
Q8VCC8	Rap guanine nucleotide exchange factor 3 OS=Mus musculus OX=10090 GN=Rapgef3 PE=1 SV=2
Q9Z1C8	Rap guanine nucleotide exchange factor 3 OS=Rattus norvegicus OX=10116 GN=Rapgef3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001143 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR043533 all species →	Family	Cyclic nucleotide-binding domain-containing protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23011 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_074639663.1 in Acropora palmata.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074639663.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639663.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

56TPM > 0

2Conditions

15.3Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	32	3.71	9.67
all_coral_tissue · baseline	38	24	4.01	15.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.67
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.74
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.60
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.24
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.02
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.20
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.00
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.90
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.82
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.30
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.20
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.99
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.94
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.94
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.81
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.77
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.36
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.24
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.05
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.56
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.55
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.95
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.90
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.52
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.52
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.26
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.21
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.00
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.60
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.46
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.91
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.39
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.26
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.23
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.29
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.02
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.83
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.99
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.80
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.60
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.30
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.51
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.19
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.73
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.60
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.50
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.21
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.06
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.54
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.53
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.86
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.73
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.58
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.43
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.74
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.73
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.