Detailed information of XP_074639720.1 in Acropora palmata

Genomic Location: NC_133892.1:3174127...3230334
NR annotation: XP_044183944.1, fibrocystin-L-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86WI1Fibrocystin-L OS=Homo sapiens OX=9606 GN=PKHD1L1 PE=1 SV=2
Q80ZA4Fibrocystin-L OS=Mus musculus OX=10090 GN=Pkhd1l1 PE=1 SV=1
P08F94Fibrocystin OS=Homo sapiens OX=9606 GN=PKHD1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001210 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07691
all species →
PA14PA14 domainDomainInterproscan
PF00028
all species →
CadherinCadherin domainDomainInterproscan
PF01833
all species →
TIGIPT/TIG domainDomainInterproscan
PF10162
all species →
G8G8 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR014756
all species →
Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR011050
all species →
Homologous_superfamilyPectin lyase fold/virulence factorInterproscan
IPR006626
all species →
RepeatParallel beta-helix repeatInterproscan
IPR002909
all species →
DomainIPT domainInterproscan
IPR002126
all species →
DomainCadherin-likeInterproscan
IPR011658
all species →
DomainPA14 domainInterproscan
IPR008972
all species →
Homologous_superfamilyCupredoxinInterproscan
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894
all species →
Conserved_siteCadherin conserved siteInterproscan
IPR052387
all species →
FamilyFibrocystin-related proteinInterproscan
IPR036439
all species →
Homologous_superfamilyDockerin domain superfamilyInterproscan
IPR019316
all species →
DomainG8 domainInterproscan
IPR037524
all species →
DomainPA14/GLEYA domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46769
all species →
POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →
Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007155
all species →
Biological Processcell adhesionInterproscan
GO:0000272
all species →
Biological Processpolysaccharide catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074639720.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639720.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
78TPM > 0
2Conditions
44.4Max TPM
14.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 43 15.29 44.35
all_coral_tissue · baseline 38 35 12.48 28.41

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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