Detailed information of XP_074639802.1 in Acropora palmata

Genomic Location: NC_133882.1:31247924...31250092
NR annotation: XP_029185031.1, mediator of RNA polymerase II transcription subunit 22-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q800L3Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus OX=9031 GN=MED22 PE=3 SV=1
Q6GQ95Mediator of RNA polymerase II transcription subunit 22 OS=Xenopus laevis OX=8355 GN=med22 PE=2 SV=1
Q15528Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens OX=9606 GN=MED22 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007840 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06179
all species →		Med22Surfeit locus protein 5 subunit 22 of Mediator complexFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009332
all species →		FamilyMediator of RNA polymerase II transcription subunit 22Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12434
all species →		MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592
all species →		Cellular Componentmediator complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15139MED22; mediator of RNA polymerase II transcription subunit 22-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074639802.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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