Gene detail

Detailed information of XP_081301179.1 in Orbicella franksi

Genomic Location: NC_138155.1:11796342...11799136
NR annotation: XP_020600764.1, nuclear respiratory factor 1-like [Orbicella faveolata]
Species abbreviation OFRAN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04073	DNA-binding protein P3A2 OS=Strongylocentrotus purpuratus OX=7668 PE=1 SV=1
Q16656	Nuclear respiratory factor 1 OS=Homo sapiens OX=9606 GN=NRF1 PE=1 SV=1
Q9WU00	Nuclear respiratory factor 1 OS=Mus musculus OX=10090 GN=Nrf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005847 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10492 all species →	Nrf1_activ_bdg	Nrf1 activator activation site binding domain	Domain	Interproscan
PF10491 all species →	Nrf1_DNA-bind	NLS-binding and DNA-binding and dimerisation domains of Nrf1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039142 all species →	Family	NRF1/Ewg family	Interproscan
IPR019525 all species →	Domain	Nuclear respiratory factor 1, NLS/DNA-binding, dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20338 all species →	NUCLEAR RESPIRATORY FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11831	NRF1; nuclear respiratory factor 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.