Gene detail

Detailed information of XP_081301993.1 in Orbicella franksi

Genomic Location: NC_138145.1:6707653...6734554
NR annotation: XP_020615786.1, nuclear pore complex protein Nup214-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081301993

ATGGCGGATAGTGAGGATGAAGAAACTCCTCCAGAGCGAGATGTGAAGGATTTTAACTTCAAGCAAATGAGAAAAATACGAATGTTTGAATCACCAACAAATCTACCCAAACCTCGCTCAAGTTTACTTGCTGCTTCGACCAAATATGGCTTGACTTTTGTAGGTTGCCCTACAGGAATAAAAGTGATAAAAACTGAAACTATTGAAAGGATCAACGAGTCTGATGAAGGGAGTATGCAGAATATTGTGGGGCACTGTCCCTCATCGTTCATTCAGACTGGGCATCCTGTACAGTTTGTTGGTTTAAGTAGTGATGATCTTACTCTATCTGTCTGTTATGAGAATGGAACTCAAACTGTTATGGTGCTCTATGATGTACCAACACTCGGAAGCTCTAACCCTTCAATGGCCAAATTTGGTGAAATTACTCTAACTAGAGATGAAGGAGCAAGTGTTGGGAACGTTCTGTGGAATCCTGGTTTTCCTGGTATCTTTGCTGTTTGTCTCAGTTCTGGCTCTGTGGCAGTGATGGAGTTGACAGAAACAGAAATAAAAACACTGGCAACCCTTCCTGGAAGTGTAAAAGCAAGTGCAATTTGTTGGAGTCCTAAAGGGAAACAGCTAGTAGTGGGACATAGAGATGGCAGGTTAACTCAGTATTCACAGGCTCTGGAGGTCAAAAGGGAAATAGAATGTCCTGAAGTTTTCATTGATGATCCCCATTCAGTGACAGATCTGTTGTGGATCACTGCAACATTGTTTGCTGCTGTTTACTCTAGTTTCGATGATGGAGATACCCCAAAGTTTCAGCTTATTTCTGCTCCTAAAAATGAACCAAGGACCATAACTAACTTTGATGATATCTATTATGTGATGAGCGAAGAACGAGAACCAATGTACTATTTGAAGAACATTGCTGAATGGACTATGGTTGTTTCTGCTTGTTCTAATGGTTTTGAATCTGCCGTGATTGGAAAATATGGAGGAGAGGCTACAACCCTGTGGGAAAAGTGGAATTTTGAAGAAACTGGCCGTGCAGAGATGCCGCTGACTAACAACAATGATGAGACATTTCCCATGGGTTTGGCATTTGACTTTAGCTCAACCAGACCAGTTATTGAAGGAGAGAAACGCCTTTCTCCTGCCCCAATAATGATGCTTCTGTCAACAGATGGTGTCTTGTGCCCATTTTATATGGTGAATCAAACTCCTAATACAGATCACAGTATCATAAAGCCAGTGGAGCCTTTACCCCTAGGAGGACAAAGAAAAGCAATTAAAGCGTCAAATGCAGGTCCTTTGTCAACTGGTACACCAGGCTTGGCTCCCAAAGAGAGTGTTCCATCTGGACCTAGAACTGCTGGAGACCTTCCTGTCGGTGCCTTTGCATTTGTTGGAACCAAGCAAGCTTTTTCATCTGCATCTTGTACATTTTTACCAGGGCTTTCAGGGACCCTCCCTGCAAGTGCTTTTTCATTTGCCGGTTCCAAGCAACCTGTTTCCTTTTCATCAGTGACTCCAACATCAGCAACACCTTCAAGTACACCAGCTAGTGCCTTGTCATTTACCAGCTCCAAGCAGAATGTTCCTTTGTTTTCTGGTGTACCCTCATCAGGTACATCAGGGGACCTTCCAGCTGGTGCCTTTTCATTTGGCAACCCAAAACAATCTGTTTCCTCTTCGGGGAATGCCCCCACTAGTGCCTTTTTGTCAACTAACCAAAAGCAGCCAGGGTTGACAGCTACATTTAAGCTTCCAACACAGACCCAAATCCCAGCAACAGAATCAGAGAGACCTTTAGCCAGTAGCACACAGCTTGTAAAACCCACACCCAGTAGTCAGACCCAACCTGGTAATCCTGGACTATCATCTTTCCAAACACCTTTGCTCACTTCTACTTCAATTGCAAAAGGGGATGATATACCAAAGGCAAGTTCCTCAGTTCCTTCTCACTTGACAGAGCAAGGGTTATTGGCACAGCCAAAGCCAACTCTTGCCAGAGCTGCTGTGACCAAAACACCTGCTACAAGGCAGGATATGTATAAGGAAGAAGGTTCAAGTTTGACAGAACTAAAACCCACTCCACAGGGCTTCAAATTACCTGGGCACTCAACTCCTACTGAGGGTGTAAGGCGAGAACCTACCAGAAAGACTGCTCCAGTTTCAAAAGGCAATGTAATTGAGGCATCTGTGTCAGAAAATATCCAAGAAGCGATCAGCCACTTTAACACAGAGATGGCAAAGTTATGTGACAATGTCAAGACCATGCAGAGCAACTGTCGCCTTACAGATGATAACAAGGATCTGGCTTCTCTTAGAAAGAGAACAGAAGATGTTGCCTCAAAATTGTCAGAAATAAAAAGTGCAACAAAGGAACAGCACAAGGATATTGATGATGAAAAAAGGAAACTGTTTGAAGCATTTGAGATGCTTGAAGATGCCAGGATTAGACAGGAAAGAAAGAGTGACCAAAGATATGTTCAGTTGTTAAAGTCTAGAGCTCTGGATCCAGTGAACACAAGTAAGATGAGAGAGATCAGAAATCTCCATTTGTATTTGGATAAAACACTTAGGGAGGTGAACATGGTTCTTAATGAACAGTGGAACAAAGAAAATGAACGCAAAAGATCCATTCAGCGTCCTGCATTGGTTGAGGTTTACCAGACCTTGAAGGTCCACCATAAAATTACACAAGATCAAGCAGCCAAGTTAGAACAGATCACGCAGGAAATGAAGAATCGCAAACTATTGTCAACTAGCTGGCAGCGAAGTCCACTCAATACAACAAGTTTAAGGGATGACTTGTCCTCTGTGCGTGATCCCTTTGCTGTGTCAAAACAGGAACTAAAATCGCCAATCAAAAATGTATCAGCTCCAATATCTCCTCAAAAGCAGGCCCAGCTGAGAAGCATGTTTCAGAAACGACGAAACACCCCAGTAAGAAGGAGCACGGTTGTTCCAAGTACTGTTACCAAGACACCCCTAGTGAAGACTAGTAGACCTGAAGTGCCATTCTTCTCTTCGACACCTGCCGTAAGGCCAGAGGACACAGCAGAGGGATCTAAAGGACGGTTCAGCTTTGATGATGCTATCCCCGAAGAAATTAAGGTGTCTGACGATGATGGAAGTCTCGCAGAAGATGGGTATCAGGAGGAGGAACCCTGCCAAGAGAAAGAGCTTGGGCATTTGGATGCAATCCACAAAGCCTCGGCTAGTGGACCAGATCCTTCACCTATACATTCTGAGCCTACATTAAGCATAAAAGGGAGTTTTAGTTTGGGCAATTCACAGGATGAGGCTGTTTTGAAGAAGCCACCTCATCCCGTGGGGATCACAGCAGCTGTTGAAAGTTCACACGCCAAGTCCATCCCACAGCCTACTGTGGTCGGAGCATTTTCTGCAGTTGATAAATCTGTTGGTGGCGGCATTAAACCACCTAGACCTCAACCAACAAAAGCAGAACCAGCATTAGCACCAAGTGGTCTTTTCGTTCCAGCAACCAAGGCAGAGCCCACAGCAACTGCAACTATTCCAGCAAAAAGCGACTTTGTTCCAAATGTCAAGGTCATTAGCACAGAAACACCTCCCAACATTGCTGCAGCAATGGCTGCCATGAGCAGAGCTAGTGCATCCCAGGGTGCTGCTCAGTCAGGCAGTAACCTTGACCCTTCAGCCAGCATCGAACCAGTAACACTAGTAACTTATAAACCACAGGCACAAGGGGGTGCACAACCTAAGGACTATGATGTAGAAAACAATGCTGCAAAAGCCATTGCAAATGCAGCATTGATGGCCGCTACAGCCGAAGCCCAAAAGTCGTCCGCAAAGCCACAGTGTAGTACAGAATTCATCTTCAAGTCTAGCGATAGCAGTAAGCCCGGTCCCCCAGTGGTTACCTTCAAGCCTCCAACCTCTCCACTGCAAATGCCTGAAAGTGCATCCAAAGTTACTGCTGCTCCTAACGTCACTGTGAATCCCACGCTAGTCTTCAAACCTGCATTTGCTCCAGCCGTCCCAAGCGTATCAACAGCTTCCAGCACTGGTGGATTGCAGAAACCTTTTACAGGACCTCAAACTGTCGGCTCATTTAGCTTTGCTCCTCCAACTGGTGGTTTGCCTAATTTTGGGGCTTCCTCTGTGGCTGCCTCCTCAACACCAAGTGCATTTAGTTTTAGCACTAAAGCAAAAGACACAGTGCCCAGTCAGACAGCTGCAGCAAGTGTCGCAGCACCCAGTGCTGCAAAACCAGGAAACATCATCACTGCACCAGCTGTAGGTATCACACCAAGTCCGAGAGTGAGTAGGAATTTATTTGCAGCTGGGGAATTAAGTTCTGCAGCAGCAGCAGCCACAAGTGGGGAACAAGATGCCAAGCAGGAAGACAAGAAGGAGGTATTGAAGACCCTGCAGGTGACAACTGCAAATCCATCCATCGCTAGTTCTAGTGGAATTACGACCCCAGCAACAGTAACACCAGGATTTCCATTTTCAGCTCCAGTGCCAGCTGGTGAAGGCTTCTTTAAGAATCTTAATCTCTCGGCATCTACCATCGCTGGCAATGTGTTTGGCAGTGGTGGTGATACAAGCAGTAATCCTCCCAGCATCTTGAGTTCTTTGATGCGAGCATCTGCTCCAGGAGGTCCTGCAATCAACACTGGCAATTTGTTTGGCACGGCTCCCACTGCAGCTTCCAAGGATCCAGCATCCACTTCCGGTACACCACAAGGTCAGGTTTCTCTGCCTTCTAAAGGGACTCCATCAGAAAACAAAGATACCAGCACCCGAGCAGTAATGACACTATCTGGTTTTCCTGTATCTGCTAGTGCAGGAGGCGTTTTTGCACAGGCTTTATCTGAAAGTAGCAAGTCCAGCATGGTGTCATCTACAACTGCAACTAAGACACTTCCTGTTCCTGGAAGCATTTTCGGTGCCCCAACCACAACACCTGCATTCTCACCAGCTAGCTTATTTGATGTTTCTCTTGGTGATGCTAAATCTAGCACCACAACCCCCTCTACCACCACAGTTGCAGGTAATCTGCTTAGTTTATCTGCTGGCACTGCATCTGCTTTTTCCGCTACAAGCAGTACTAGTCCATTCTTTCCCAGCATCACTCCAGCTTCAACAAATGCCTCGGCACCAGCAGGAGGCTCCCCATTAACTTCTCTTCCGCCACCCGCGACAACAACTACAGTAACAAGTCCATCTTCCAGAGATTCTTCAACGTCAGCCGCTAGTGCAGTTGGTCTGTTCAGCAAAGTCTCGAGTACTGCAAGTCCTTTTGGTGTGGCTCTGGGTACAGTGAGTAGTGGAGCTGGCTCTGTTGGAGCTCCCTCCGCAACAACTACTGCTGGCAACCTTTTTGAAGCACCTCCATCCACTGCCTTTGCTCCCACTCCCGTATTTGGGGCCAGCACCTTTGGAACTTCTCCTGCACCTTTTAGTTCTCCTGCTAGCAGTCAAGGCAGTACTTTTGGTCCTACACAAGTATTTGGGTCATCAAACATAACAGCTGGTACCGGATCAGGGTTTGGGGCAACTGCCAGTGCGGGGTTCAGTACTGCATCCAAGCCAGCTGAGAATGCCCTAGGATTTGGATTTGGTGGCTTTGGTTTAGGAGGACAAGCCAGCTCACAGGCCAGCAAGACAAACCCCTTTGGCGTTGCACAAGGATTTGGAGGGGCAACTACTACACAGTCCTCGTTATTTGGTGGAAAGTCAGGAGTTGATGTATTTAAGATGACTGATTCACCGAAGCCAGCGTTTCACATTGGCCCGTTTTCTCAATCTGGATTTGGAACCCAATCATCTGGTGGATTTTCACGGAGCTCGTTCAGCGCTCAAGGTGGAACTGTGGCTGTCTCTGGTTTTGGCTTCGGTGCTTCATCACCCTCTGGTACCACAGGGTTCGGTTCACCACAGCCCTTTGGCTCATCCTCTGCTGGGGCGTCCGTGTTTGGCGGTACGCCTTCATTTGGTTCCGCTCCTTCATTTGGAGGAGCTCCAGCCTTTGGAAGCTCTCCTCAAGCAGGCCTAGGTGCTAGTCCATCCAGCGGGGTCTTTGGAAGTGCACCATCTGGCGGATTTGGACAATCTCAAGGCAGCTCTACATTCGGTGCCTTGGCAACCCAGTCGAGCCTTCCATCGTTTGGCGCTGTAGCTGGTATGCCGGGGACACAAGGGTTTGGTGGTATTCAACAACAACAAACAGTCCCTTCCTTTGGCTCGTTCGGCGGCGGCGGCGGCGGCGGCTCGCAGAGTCCCAGCGGTGCTTCTTTTTCACAGTGGAGGTGA

Transcript

Protein

XP_081301993.1

MADSEDEETPPERDVKDFNFKQMRKIRMFESPTNLPKPRSSLLAASTKYGLTFVGCPTGIKVIKTETIERINESDEGSMQNIVGHCPSSFIQTGHPVQFVGLSSDDLTLSVCYENGTQTVMVLYDVPTLGSSNPSMAKFGEITLTRDEGASVGNVLWNPGFPGIFAVCLSSGSVAVMELTETEIKTLATLPGSVKASAICWSPKGKQLVVGHRDGRLTQYSQALEVKREIECPEVFIDDPHSVTDLLWITATLFAAVYSSFDDGDTPKFQLISAPKNEPRTITNFDDIYYVMSEEREPMYYLKNIAEWTMVVSACSNGFESAVIGKYGGEATTLWEKWNFEETGRAEMPLTNNNDETFPMGLAFDFSSTRPVIEGEKRLSPAPIMMLLSTDGVLCPFYMVNQTPNTDHSIIKPVEPLPLGGQRKAIKASNAGPLSTGTPGLAPKESVPSGPRTAGDLPVGAFAFVGTKQAFSSASCTFLPGLSGTLPASAFSFAGSKQPVSFSSVTPTSATPSSTPASALSFTSSKQNVPLFSGVPSSGTSGDLPAGAFSFGNPKQSVSSSGNAPTSAFLSTNQKQPGLTATFKLPTQTQIPATESERPLASSTQLVKPTPSSQTQPGNPGLSSFQTPLLTSTSIAKGDDIPKASSSVPSHLTEQGLLAQPKPTLARAAVTKTPATRQDMYKEEGSSLTELKPTPQGFKLPGHSTPTEGVRREPTRKTAPVSKGNVIEASVSENIQEAISHFNTEMAKLCDNVKTMQSNCRLTDDNKDLASLRKRTEDVASKLSEIKSATKEQHKDIDDEKRKLFEAFEMLEDARIRQERKSDQRYVQLLKSRALDPVNTSKMREIRNLHLYLDKTLREVNMVLNEQWNKENERKRSIQRPALVEVYQTLKVHHKITQDQAAKLEQITQEMKNRKLLSTSWQRSPLNTTSLRDDLSSVRDPFAVSKQELKSPIKNVSAPISPQKQAQLRSMFQKRRNTPVRRSTVVPSTVTKTPLVKTSRPEVPFFSSTPAVRPEDTAEGSKGRFSFDDAIPEEIKVSDDDGSLAEDGYQEEEPCQEKELGHLDAIHKASASGPDPSPIHSEPTLSIKGSFSLGNSQDEAVLKKPPHPVGITAAVESSHAKSIPQPTVVGAFSAVDKSVGGGIKPPRPQPTKAEPALAPSGLFVPATKAEPTATATIPAKSDFVPNVKVISTETPPNIAAAMAAMSRASASQGAAQSGSNLDPSASIEPVTLVTYKPQAQGGAQPKDYDVENNAAKAIANAALMAATAEAQKSSAKPQCSTEFIFKSSDSSKPGPPVVTFKPPTSPLQMPESASKVTAAPNVTVNPTLVFKPAFAPAVPSVSTASSTGGLQKPFTGPQTVGSFSFAPPTGGLPNFGASSVAASSTPSAFSFSTKAKDTVPSQTAAASVAAPSAAKPGNIITAPAVGITPSPRVSRNLFAAGELSSAAAAATSGEQDAKQEDKKEVLKTLQVTTANPSIASSSGITTPATVTPGFPFSAPVPAGEGFFKNLNLSASTIAGNVFGSGGDTSSNPPSILSSLMRASAPGGPAINTGNLFGTAPTAASKDPASTSGTPQGQVSLPSKGTPSENKDTSTRAVMTLSGFPVSASAGGVFAQALSESSKSSMVSSTTATKTLPVPGSIFGAPTTTPAFSPASLFDVSLGDAKSSTTTPSTTTVAGNLLSLSAGTASAFSATSSTSPFFPSITPASTNASAPAGGSPLTSLPPPATTTTVTSPSSRDSSTSAASAVGLFSKVSSTASPFGVALGTVSSGAGSVGAPSATTTAGNLFEAPPSTAFAPTPVFGASTFGTSPAPFSSPASSQGSTFGPTQVFGSSNITAGTGSGFGATASAGFSTASKPAENALGFGFGGFGLGGQASSQASKTNPFGVAQGFGGATTTQSSLFGGKSGVDVFKMTDSPKPAFHIGPFSQSGFGTQSSGGFSRSSFSAQGGTVAVSGFGFGASSPSGTTGFGSPQPFGSSSAGASVFGGTPSFGSAPSFGGAPAFGSSPQAGLGASPSSGVFGSAPSGGFGQSQGSSTFGALATQSSLPSFGAVAGMPGTQGFGGIQQQQTVPSFGSFGGGGGGGSQSPSGASFSQWR

Uniprot

Uniprot term	Description
Q80U93	Nuclear pore complex protein Nup214 OS=Mus musculus OX=10090 GN=Nup214 PE=1 SV=2
P35658	Nuclear pore complex protein Nup214 OS=Homo sapiens OX=9606 GN=NUP214 PE=1 SV=2
Q9W1X4	Nuclear pore complex protein Nup214 OS=Drosophila melanogaster OX=7227 GN=Nup214 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR026054	Family	Nuclear pore complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14317	NUP214, CAN; nuclear pore complex protein Nup214	-	Messenger RNA biogenesis	ko03019	deepkoala