Gene detail

Detailed information of XP_081302016.1 in Orbicella franksi

Genomic Location: NC_138156.1:16072572...16089951
NR annotation: XP_020601845.1, splicing factor, suppressor of white-apricot homolog [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081302016

ATGTCGGTGTTGTTTGACCCGCATGAAGTCGGTATAAATGGTCAGGCGAGTTTGCGAAGGGTGCCGAAGATTAGAAGAAAGGAGGATGACTTACTCGTGTTCGGATACGCGTGCAAGTTTTTTGAGAACAGCGGAAAGGGTGCGTTCTTTGATGAAGAAAAGAGTCTGATACCATGGATGGGCGACGAATCCCTTCTTATCGACAGGTTTGACGCACGTCTGTATTTTACTGACAAGGCTCAGTTTATACATAAACCTACTGAAGTGGCACCGTCCCTCACTCCAGAGGAGGAGGAGATGGAGAGACACTGTGATGAAGAAAGGTACATAGATCTCCATCGAGACTCTGCAGAGTATGACATACAACAGGAGGAGGAAATGAAACGTTTCCAACAAGAACTCCGTGAAGATGGTGCATATAATTCAGTGGCATTTAACTATCAATACAGTGCTCCAGAACATCACTTTCAGCATCCACAAACTTCTTCCACTTACAAGCCAACTTGGACTGAAGGATCAGGTTTATACCAAGCTCAACAAGCTGGCCCAACTCTTGCACCAAGTGTCCAGGAAATGAACTCATCTCCTCCTCAACCACCTCCATTCCAACAACCAGAGCCTTTTGTTCCCCCAGAAGAGCTGGAAATTCCTCCAGAAATGGAGATTCCTGAGACAGCCAAGATGCAAGCTATTATTGAAAGGACTGCTGTGTTTGTTGCGAAGCAAGGGAAACAAATGGAAATCTTAGTAAAGGCCAAGCAATCAGGAAATCCTCAATTTGACTTTCTCCTCATGGACAATTGGTTGAACCCTTATTATAAACATGTCTTGAAATATGTGACTGAGGGAAAGTACATTCCAGAAATACCTAAGCAACCATCGCCTGAACCCCAGGAAGAAGCAGAACAGACAGAGAGTGAAGATGAGTCTGATGGAGAGTATGAACTGCATCCATTGTTGCAAGCATCACTTCATAAGAAGGTTGTAAGGTCACAGCCATCATCCGCTTCATCATCTCCATTACCAGATACTCTTGGTAACAAGTTTAGTCATACTTTTGCTCTAATAACGGGATCGTCATCATCAGATGCTGCTCCACAGGAGCATGAAGGCAGCTATCATTCTCATTACAATGAAGTGGATGAAGCATTTGATTACAGCATGTGGTATCCACAAGATGATATGTATGGACACTATGTGTCATCTGCTGGTTACTCGTACCACCCCCCCATGGCACCGATACTGTCAGTAGCTGACATGATTCCACCTCCTCCCCCTCCACCAGGAGAAGGTCCCTTAGAAGAGGAGTGGTTGGATTTTGGACCATCAATGCCTCCTTTGCCACCTCCTCCCCCTCCACCAGTCCCTCCAACATTCTTTGTGCCCAACACAGTTGAAATAGCTGGGACTCTGCCTCCACCACCTCCTCCTGGAATGTCTACGACCTCTCAAGTGGCAGATGAAATCATACCACCACCTCCTGACCTTCAACCAATTGTGGATAAGTTGGCAAATTATGTGGCCAAGAATGGTCCTGATTTTGAATCAATCATCAAAGCTAAGAATGATCCTCGGTTTGAGTTCTTGAATCCATGGAATAGCTATTACAGTTATTATCAACTCAAGAAACGACAGGCACTCAAAGCTGTTTCACCGCAAATAGAAACAGAGAATGGCAAGAATCAACCTGAAGCACCCAAAGGGCCAATAAGTTTCTCAATAAAGTCAAAGGATACAAAGAAACCCAAAATTGAATATAGGACAAGTGTTATATACAAACAGAGCTATGAGCAAGGGCAGAGTGATGAGGATGGTGATGAAGCAGACACAGAAACTGAGGGCAAGGAGACATCTGATGGCAATGAGGGGAAATTGAATGCTAAGAAACCGGAGTATGCAAATAATCAAGAAACTAGTGAGAAGTCAGCTGACGACTTGACGCAACAGATGGACTCGATCAAGGCTGCTGAGAGAATTGCTCAGCATCTGGAATCTGAGTCACGAGACAAACAGCTTCAGCTGGAAAGGAGAAGAAAAGCATCACTGTTTATCAGCATGTTAAAGAACACCAACCCAGGAGATGAAACTGAAGCAAATAAGTCCTCCAGTTCTGGGAGTTCAGCACAGGTTAGGAAAACCAGAAAATTTGTGGAATCAAAAGGAGAAAAACGGTCCGACTCCCCTGCATTGAAGAGAAGCCGTGTTGACGATGATGATGATGATGATGATGATGATGATGATGAGTCAGTGAGTGGAGGAAGACTGGGTGTGCCATCACCTGATAGTATCCGTGTTACTCAGGATTTGATGGCAAAGGTGTTGGCTGCTTCCAGGAACAAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q3USH5	Splicing factor, suppressor of white-apricot homolog OS=Mus musculus OX=10090 GN=Sfswap PE=1 SV=2
D3ZTQ1	Splicing factor, suppressor of white-apricot homolog OS=Rattus norvegicus OX=10116 GN=Sfswap PE=1 SV=1
Q12872	Splicing factor, suppressor of white-apricot homolog OS=Homo sapiens OX=9606 GN=SFSWAP PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01805	Surp	Surp module	Family	Interproscan
PF09750	DRY_EERY	Alternative splicing regulator	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019147	Domain	Suppressor of white apricot, N-terminal domain	Interproscan
IPR000061	Domain	SWAP/Surp	Interproscan
IPR035967	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR040397	Family	Suppressor of white apricot	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13161	SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0000395	Biological Process	mRNA 5'-splice site recognition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24774	FNBP4; formin-binding protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala