Gene detail

Detailed information of XP_081302624.1 in Orbicella franksi

Genomic Location: NC_138156.1:5212973...5223809
NR annotation: XP_020629137.1, zinc finger protein 708-like isoform X3 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081302624

ATGGCGTCTTCAAGCAACCAAGAAGAAGCAGCTAGAGAGGTGTCAACAGACGAAACAGCATTGGAATCCAATGCAGAGACAGAAGGAACATCAGATCTGTCATCTGTTAAAACTGCATCAAACACAGGACAACAGCAAGTATTACAGCAAGGACCACAAGCACAGCAGGGTTCTGATGCAGATGGCTCAGCTGTCACAGCAGATCAGCAGGATAATAACCAAGTTGTTTCAGCAACCGAGGTGGAGCCTCAAGAAGTTGCAACATCAGGGAATGACACTGATGCACAGCAGCCTCAAACCTTGTATGTCGCAATTCAGCCAGGTGCCAACATGGAGTCTGGGCAGGGAGACCAACCAGCAGTGTACCTGGAGGTAGTGGAGGCAGGGAGTGGTACTGAGGTGACTTCCAGTGATGGGCAGGTTAGCCTGGTTCAGGAGGAGATGGTTATCGATAATGCATCTTCCACTGAGGTTACGACAATACCTACATCAGTTCTGTCTCAAGTTATGGACCAGGCCACACTCTCCACCATGCAGGCTGAAATGATAGCAGTTCAAGTTCTTTCCCAGTCTGCCACAGGTGACATACAGTACCTTCAGCACCAGTCTCCTGCTCGGTTCATTCCGATTGTCACATCAGCAGATCCCAGCACTCTTAACTCACTTCAGGCTACTCTTAGTCAAATGCCACTTGCTACCTTACAGATAAGTCCCTCACAACCAGGAGCAACAAGCCAAACAATCCAGCTTCCTGGTGGCCAAACCATTCAAGTGCCATTAAGTGTCACTCAGATGTCAGCTTTGGCAACATCACAAACAGACACAGGGGTATCGACTGGTTCCACTACCTTAACAACCAACACAGAGGCTATTATTGCTGCTGCCACCAGTGCAGAGGCGGCTGCTGCTGTAGCTCAAGAGCAGGGAGCCACTCTTGTCACTGTTCATCCTGCTGTGATAGAGACGCCAGTGGATGGGGCAGAAGGTGGAAATGAAGGAGAGGAGAACGAGGGTGATGAGGATGGCAAACCCAAATACACCTGTGAAATATGTGGGAAATCTTACATTCGCTCATGGTCATATTACGGACATATGAGAGAACATGCCTCTGGTGAGAAGCAGCACAAATGCGATGTGTGCGGCAAGATCTTCAACTATGCCAGCAACCTGCGTCAGCACATGCTCATTCATACAGGTGAGAAGCCATATGAGTGTGAGTACTGTGACAAAGCATTTAACAACCCCAGCTCTCTGCGATCCCATGTTCTGTCACATTCAGAGGACAGACCTTACATTTGTGATCATGAAGCTTGTGGCAAGGCATTTAACAACCCCGGATCACTAAGGGTTCATCGCCGAGTTCATCAGGAAGAGAAGCCCCACAAGTGTGAGGTGGAAGGCTGTGACAAGGCTTTCAAGACACCTGCAGAGCTGTCACGTCATGCGTTCAGGCACACCGGGGAAAAGCCTCACAAATGCGATCAATGTGAGAAAGCCTTTATCCGCTATGACGACCTCAAACGACATTATCGTATTCACACAGGGGAGAAACCTTTCAAATGTGATCAATGTGACTTTGCCTGCATCCAGTCGTTTGACCTCGTGAAGCACAAGTTCACCCACAGTGGTGACAAGCCTTATAAGTGCGATATGTGTCCAAAGCAGTTCACTCGACCAGCTCGACTGAGGGATCATATAAGGACCCACACTGGAGAAAAGCCCTACGTTTGTGATGTGTGTGGTAAAGGCTTTGCCATTCAGACTGGGCTCAAGTCTCATCAGGCAATGCATACTGGAGACAAACCCTTCAAATGTGATGAGTGCGACAAGACATTCCGTACCCAGCTCGAGCTACAGTCTCACATGGGACGACACACTGGAGTGAAGCCGTTCAAATGTGACCTCTGTGATAAGGAGTTCATATCCACTATCACATTCAAGCGTCATGCCATTGTGCATTCTGGGGAGAAGCCGTTTGAGTGTAATGAGTGTGGAAGGCGCTTTGCTCGGTCTACCGATCTCAAAGTTCACTTGCCAGTGCACAGCGAGGACAAGCCGTACAAGTGTGGCGAGTGTGAGAAGATGTTCACTCGCTTTAGCACACTGAAGGAACACATCCGAACCCACACAGGTGAGCGGCCTTTTAAATGCGAGCAGTGTGGCCGCGAGTTCAACCACAGGAGCCATTTTAACAACCATCTCAGGATCCACACTGGCGAGAAGCCCTTCAAGTGCGAGATCTGCGAGAAGGACTTTTCTCGCAAGGCGTCTCTCCGCTATCACATGAAGGTGCATAACAAGGGTGACGGGCATGTCAGAATCCGCACCAAAAAGGACGAGCAGTCTGACACCGAGATCTTGGATGAACGATCACATGGGGCTACATACTTTGTCGGAGCAGACCATGTCCACAGTGAACATCAGTCACCTGGGGACTGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13465	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR050888	Family	Zinc Finger C2H2-type Transcription Regulators	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24406	TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043035	Molecular Function	chromatin insulator sequence binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala